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[Pruthvi] Integrate MSstatsBioNet with MSstatsShiny #23

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tonywu1999 opened this issue Jan 9, 2025 · 1 comment
Closed

[Pruthvi] Integrate MSstatsBioNet with MSstatsShiny #23

tonywu1999 opened this issue Jan 9, 2025 · 1 comment
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@tonywu1999
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Context

We would like to display the INDRA integration with MSstats on the MSstatsShiny website. This task involves creating the UI components to support this integration.

The future experiments tab should provide some examples on how to implement this new page:

Subtasks

  • Create a new UI function that displays a page containing options for users to generate visualizations and tables of networks from their dataset. Options could include:
    • Selecting perturbation vs discovery experiment
    • P-value cutoff / LogFC cutoff sliders
    • Dropdown of statement types
    • Path length slider
  • Create a new server function that processes data and calls MSstatsBioNet functions based on user input.
  • Create a new tab Network Interpretation here, referencing the new UI function.
  • Call the new server function here.
  • Unit Test
  • PR & Merge

Acceptance Criteria

New visualizations can be displayed on MSstatsShiny

@tonywu1999
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