- Improved memory management for efficiency.
- Added support for ProteinProspector data conversion to MSstatsTMT format.
- Updated NA handling for Skyline and Spectronaut converters
- Added MetaMorpheus converter functionality.
- Added DIA-NN converter.
- Fixed bugs related to data types.
- Fixed bug that resulted in missing TechReplicate column in output.
- Added Philosopher converter.
- Added methods for MSstatsValidated objects.
- Fixed a bug related to SRM inputs.
- Updated Spectronaut converter to allow annotation in input file.
- Minor bug fixes
- Updated MSstatsLogsSettings function to allow differents settings for different packages
- Added logging utitilies:
MSstatsLogsSettings
,MSstatsSaveSesionInfo
. - Added functions for importing and cleaning data:
MSstatsImport
,MSstatsClean
. - Added functions for preprocessing:
MSstatsMakeAnnotation
,MSstatsPreprocess
,MSstatsBalancedDesign
. - Added vignette.
- Added a
NEWS.md
file to track changes to the package.