You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardexpand all lines: README.md
+2
Original file line number
Diff line number
Diff line change
@@ -41,6 +41,8 @@ To install 3DeeCellTracker, please follow the instructions below:
41
41
If you encounter any issues or have any questions, please refer to the project's documentation or raise an issue in the GitHub repository.
42
42
43
43
## Quick Start
44
+
-**Important**: Please use the notebooks [here](https://github.com/WenChentao/3DeeCellTracker/tree/v1.0.0) if you installed version 1.0.0 from PyPI. If you installed from the source code available at this repository, use the notebooks provided below.
45
+
44
46
To learn how to track cells using 3DeeCellTracker, please refer to the following notebooks for examples. We recommend using StarDist for segmentation, as we have optimized the StarDist-based tracking programs for more convenient and quick cell tracking. Users can also use the old way with 3D U-Net.
45
47
1. Train a custom deep neural network for segmenting cells in new optical conditions:
46
48
-[**Train 3D StarDist (notebook with results)**](Examples/use_stardist/train_stardist.ipynb)
0 commit comments