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WytammaWytamma
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🎨 rename marginal to pairwise
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‎backend/beastiary/webapp-dist/index.html

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<!DOCTYPE html><html lang="en"><head><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width,initial-scale=1"><!--[if IE]><link rel="icon" href="/favicon.ico"><![endif]--><title>Beastiary</title><link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700,900"><link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Material+Icons"><link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700,900"><link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Material+Icons"><link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Roboto:100,300,400,500,700,900"><link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/@mdi/font@latest/css/materialdesignicons.min.css"><style>html {
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overflow-y: auto !important;
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}</style><link href="/css/login.4b7f13da.css" rel="prefetch"><link href="/css/login~main-dashboard.49552835.css" rel="prefetch"><link href="/css/login~main~main-dashboard.87cb79bc.css" rel="prefetch"><link href="/css/main-dashboard.21941226.css" rel="prefetch"><link href="/css/main.38cd41ea.css" rel="prefetch"><link href="/css/main~main-dashboard.27813474.css" rel="prefetch"><link href="/js/login.aa85044f.js" rel="prefetch"><link href="/js/login~main-dashboard.3ae3e551.js" rel="prefetch"><link href="/js/login~main~main-dashboard.3a1f6d10.js" rel="prefetch"><link href="/js/main-dashboard.5da8a2ea.js" rel="prefetch"><link href="/js/main.5136f4ee.js" rel="prefetch"><link href="/js/main~main-dashboard.80ebc61e.js" rel="prefetch"><link href="/js/reset-password.fe1c5ee2.js" rel="prefetch"><link href="/js/start.4abc32f1.js" rel="prefetch"><link href="/css/chunk-vendors.5b404c1b.css" rel="preload" as="style"><link href="/js/app.4a6cbf8f.js" rel="preload" as="script"><link href="/js/chunk-vendors.9a0991d8.js" rel="preload" as="script"><link href="/css/chunk-vendors.5b404c1b.css" rel="stylesheet"><link rel="icon" type="image/png" sizes="32x32" href="/img/icons/favicon-32x32.png"><link rel="icon" type="image/png" sizes="16x16" href="/img/icons/favicon-16x16.png"><link rel="manifest" href="/manifest.json"><meta name="theme-color" content="#4DBA87"><meta name="apple-mobile-web-app-capable" content="no"><meta name="apple-mobile-web-app-status-bar-style" content="default"><meta name="apple-mobile-web-app-title" content="frontend"><link rel="apple-touch-icon" href="/img/icons/apple-touch-icon-152x152.png"><link rel="mask-icon" href="/img/icons/safari-pinned-tab.svg" color="#4DBA87"><meta name="msapplication-TileImage" content="/img/icons/msapplication-icon-144x144.png"><meta name="msapplication-TileColor" content="#000000"></head><body><noscript><strong>We're sorry but Beastiary doesn't work properly without JavaScript enabled. Please enable it to continue.</strong></noscript><div id="app"></div><script src="/js/chunk-vendors.9a0991d8.js"></script><script src="/js/app.4a6cbf8f.js"></script></body></html>
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}</style><link href="/css/login.4b7f13da.css" rel="prefetch"><link href="/css/login~main-dashboard.49552835.css" rel="prefetch"><link href="/css/login~main~main-dashboard.87cb79bc.css" rel="prefetch"><link href="/css/main-dashboard.21941226.css" rel="prefetch"><link href="/css/main.38cd41ea.css" rel="prefetch"><link href="/css/main~main-dashboard.27813474.css" rel="prefetch"><link href="/js/login.aa85044f.js" rel="prefetch"><link href="/js/login~main-dashboard.3ae3e551.js" rel="prefetch"><link href="/js/login~main~main-dashboard.3a1f6d10.js" rel="prefetch"><link href="/js/main-dashboard.06a298e8.js" rel="prefetch"><link href="/js/main.5136f4ee.js" rel="prefetch"><link href="/js/main~main-dashboard.80ebc61e.js" rel="prefetch"><link href="/js/reset-password.fe1c5ee2.js" rel="prefetch"><link href="/js/start.4abc32f1.js" rel="prefetch"><link href="/css/chunk-vendors.5b404c1b.css" rel="preload" as="style"><link href="/js/app.3a8a8e57.js" rel="preload" as="script"><link href="/js/chunk-vendors.9a0991d8.js" rel="preload" as="script"><link href="/css/chunk-vendors.5b404c1b.css" rel="stylesheet"><link rel="icon" type="image/png" sizes="32x32" href="/img/icons/favicon-32x32.png"><link rel="icon" type="image/png" sizes="16x16" href="/img/icons/favicon-16x16.png"><link rel="manifest" href="/manifest.json"><meta name="theme-color" content="#4DBA87"><meta name="apple-mobile-web-app-capable" content="no"><meta name="apple-mobile-web-app-status-bar-style" content="default"><meta name="apple-mobile-web-app-title" content="frontend"><link rel="apple-touch-icon" href="/img/icons/apple-touch-icon-152x152.png"><link rel="mask-icon" href="/img/icons/safari-pinned-tab.svg" color="#4DBA87"><meta name="msapplication-TileImage" content="/img/icons/msapplication-icon-144x144.png"><meta name="msapplication-TileColor" content="#000000"></head><body><noscript><strong>We're sorry but Beastiary doesn't work properly without JavaScript enabled. Please enable it to continue.</strong></noscript><div id="app"></div><script src="/js/chunk-vendors.9a0991d8.js"></script><script src="/js/app.3a8a8e57.js"></script></body></html>

‎backend/beastiary/webapp-dist/js/app.4a6cbf8f.js ‎backend/beastiary/webapp-dist/js/app.3a8a8e57.js

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‎backend/beastiary/webapp-dist/js/app.4a6cbf8f.js.map ‎backend/beastiary/webapp-dist/js/app.3a8a8e57.js.map

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‎backend/beastiary/webapp-dist/js/main-dashboard.5da8a2ea.js ‎backend/beastiary/webapp-dist/js/main-dashboard.06a298e8.js

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‎backend/beastiary/webapp-dist/js/main-dashboard.5da8a2ea.js.map ‎backend/beastiary/webapp-dist/js/main-dashboard.06a298e8.js.map

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‎backend/beastiary/webapp-dist/precache-manifest.cb6f36d74a3ef3040abcbe4f5292a63a.js ‎backend/beastiary/webapp-dist/precache-manifest.17317f514f7278a37554b3d83f96538f.js

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"url": "/css/login~main~main-dashboard.87cb79bc.css"
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},
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{
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"revision": "727ece419e943fd914c3",
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"revision": "06cd3ff32f227a397e22",
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"url": "/css/main-dashboard.21941226.css"
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},
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{
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"url": "/css/main~main-dashboard.27813474.css"
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},
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{
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"revision": "a4659610f56ef2aebc70032e32beb209",
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"revision": "401484f6e6d72ce76a6cab96076b28dd",
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"url": "/index.html"
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},
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{
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"revision": "00bd310ed85065f3c67c",
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"url": "/js/app.4a6cbf8f.js"
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"revision": "22b3d26ccaa3850251de",
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"url": "/js/app.3a8a8e57.js"
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},
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{
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"revision": "efb27178083e9bac70b9",
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"url": "/js/login~main~main-dashboard.3a1f6d10.js"
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},
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{
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"revision": "727ece419e943fd914c3",
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"url": "/js/main-dashboard.5da8a2ea.js"
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"revision": "06cd3ff32f227a397e22",
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"url": "/js/main-dashboard.06a298e8.js"
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},
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{
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"revision": "22a0af3690e2a870c9ae",

‎backend/beastiary/webapp-dist/service-worker.js

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importScripts("https://storage.googleapis.com/workbox-cdn/releases/4.3.1/workbox-sw.js");
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importScripts(
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"/precache-manifest.cb6f36d74a3ef3040abcbe4f5292a63a.js"
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"/precache-manifest.17317f514f7278a37554b3d83f96538f.js"
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);
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workbox.core.setCacheNameDetails({prefix: "frontend"});

‎backend/pyproject.toml

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[tool.poetry]
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name = "beastiary"
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version = "1.5.2"
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version = "1.5.3"
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description = ""
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authors = ["Wytamma Wirth <wytamma.wirth@me.com>"]
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readme = "PYPI-README.md"

‎docs/images/marginal.png ‎docs/images/pairwise.png

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‎docs/plots/joint-marginal.md

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‎docs/plots/pairwise.md

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The 'Pairwise' panel will pairwise plots for the selected traces. Pairwise plots are useful for finding correlations between the samples.
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![](../images/pairwise.png)
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Here we can see that `meanRate` is negatively correlated with `treeLength`.

‎docs/tutorial/google-colab.md

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Here you can see an example of this notebook adapted to also run beastiary:
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[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/Wytamma/ColabBEAST/blob/main/BEAST2.ipynb)
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[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/1XfKBhTLIenFUB1_uoDwKBnJey6gHna4e?usp=sharing)

‎frontend/src/components/data/graphs/Marginal.vue ‎frontend/src/components/data/graphs/Pairwise.vue

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<template>
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<Plotly :data="JointData" :layout="layout" :toImageButtonOptions="{
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filename: 'marginal',
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filename: 'pairwise',
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width: null,
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height: null,
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format: 'svg'
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},
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})
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// @ts-ignore
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export default class Marginal extends Vue {
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export default class Pairwise extends Vue {
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get modeBarButtons() {
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return [
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'zoom2d', 'pan2d', 'select2d', 'lasso2d', 'zoomIn2d', 'zoomOut2d', 'autoScale2d', 'resetScale2d',

‎frontend/src/views/main/Dashboard.vue

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Histogram
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</v-tab>
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<v-tab>
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Marginal
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Pairwise
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</v-tab>
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<v-tab>
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Parallel
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</v-tab-item>
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<v-tab-item>
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<v-card flat class="pa-2" fill-height>
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<Marginal v-if="tab === 3"/>
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<Pairwise v-if="tab === 3"/>
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</v-card>
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</v-tab-item>
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<v-tab-item>
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import AddTraceButton from '@/components/data/AddTraceButton.vue';
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import CumulativeESS from '@/components/data/graphs/ESS.vue';
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import Histogram from '@/components/data/graphs/Histogram.vue';
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import Marginal from '@/components/data/graphs/Marginal.vue';
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import Pairwise from '@/components/data/graphs/Pairwise.vue';
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import Parallel from '@/components/data/graphs/Parallel.vue';
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import Trace from '@/components/data/graphs/Trace.vue';
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import Violin from '@/components/data/graphs/Violin.vue';
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AddTraceButton,
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StatsTable,
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CumulativeESS,
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Marginal,
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Pairwise,
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},
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})
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export default class Dashboard extends Vue {

‎mkdocs.yml

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- tutorial/google-colab.md
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- tutorial/running-in-the-background.md
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- Plots:
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- plots/joint-marginal.md
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- plots/pairwise.md
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- plots/Cumulative-ESS.md
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- plots/parallel-coordinates.md
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- Design and Implementation: design.md

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