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test_install.py
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#!/usr/bin/env python
"""
Simple script for testing various SfePy functionality, examples not
covered by tests, and running the tests.
The script just runs the commands specified in its main() using the
`subprocess` module, captures the output and compares one or more key
words to the expected ones.
The output of failed commands is saved to 'test_install.log' file.
"""
from __future__ import print_function
from __future__ import absolute_import
import time
import sys
from argparse import ArgumentParser, RawDescriptionHelpFormatter
import shlex
import subprocess
import logging
DEBUG_FMT = '*' * 55 + '\n%s\n' + '*' * 55
def _get_logger(filename='test_install.log'):
"""
Convenience function to set-up output and logging.
"""
logger = logging.getLogger('test_install.py')
logger.setLevel(logging.DEBUG)
console_handler = logging.StreamHandler()
console_handler.setLevel(logging.INFO)
file_handler = logging.FileHandler(filename)
file_handler.setLevel(logging.DEBUG)
logger.addHandler(console_handler)
logger.addHandler(file_handler)
return logger
logger = _get_logger()
def check_output(cmd):
"""
Run the specified command and capture its outputs.
Returns
-------
out : tuple
The (stdout, stderr) output tuple.
"""
logger.info(cmd)
args = shlex.split(cmd)
p = subprocess.Popen(args, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
out = [ii.decode() for ii in p.communicate()]
return out
def report(out, name, line, item, value, eps=None, return_item=False):
"""
Check that `item` at `line` of the output string `out` is equal
to `value`. If not, print the output.
"""
try:
status = out.split('\n')[line].split()
except IndexError:
logger.error(' not enough output from command!')
ok = False
else:
try:
logger.info(' comparing: %s %s', status[item], value)
if eps is None:
ok = (status[item] == value)
else:
try:
ok = abs(float(status[item]) - float(value)) < eps
except:
ok = False
except IndexError:
ok = False
logger.info(' %s: %s', name, ok)
if not ok:
logger.debug(DEBUG_FMT, out)
if return_item:
return ok, status[item]
else:
return ok
def report2(out, name, items, return_item=False):
"""
Check that `items` are in the output string `out`.
If not, print the output.
"""
ok = True
for s in items:
logger.info(' checking: %s', s)
if s not in out:
ok = False
break
logger.info(' %s: %s', name, ok)
if not ok:
logger.debug(DEBUG_FMT, out)
if return_item:
return ok, s
else:
return ok
def report_tests(out, return_item=False):
"""
Check that all tests in the output string `out` passed.
If not, print the output.
"""
import re
search = re.compile('([0-9]+) test file\(s\) executed in ([0-9.]+) s, ([0-9]+) failure\(s\) of ([0-9]+) test\(s\)').search
try:
stats = search(out).groups()
except AttributeError:
stats = '0', '0', '-1', '0'
ok = False
ok = stats[2] == '0'
logger.info(' %s test file(s) executed in %s s, %s failure(s) of %s test(s)'
% (stats[0], stats[1], stats[2], stats[3]))
if not ok:
logger.debug(DEBUG_FMT, out)
if return_item:
return ok, stats[2]
else:
return ok
def main():
parser = ArgumentParser(description=__doc__,
formatter_class=RawDescriptionHelpFormatter)
parser.add_argument('--version', action='version', version='%(prog)s')
options = parser.parse_args()
fd = open('test_install.log', 'w')
fd.close()
if sys.version_info[0] < 3:
cmd = 'python2'
else:
cmd = 'python3'
eok = 0
t0 = time.time()
out, err = check_output('%s ./script/blockgen.py' % cmd)
eok += report(out, '...', -2, 1, '...done')
out, err = check_output('%s ./script/cylindergen.py' % cmd)
eok += report(out, '...', -2, 1, '...done')
out, err = check_output('%s ./script/convert_mesh.py meshes/3d/cylinder.vtk out.mesh' % cmd)
eok += report(out, '...', -2, 1, '...done')
out, err = check_output('%s ./script/tile_periodic_mesh.py -r 2,2 meshes/elements/2_4_2.mesh out-per.mesh' % cmd)
eok += report(out, '...', -2, 1, 'done.')
out, err = check_output('%s ./script/extract_surface.py meshes/various_formats/octahedron.node -' % cmd)
eok += report(out, '...', -2, 0, '1185')
out, err = check_output('%s ./simple.py examples/diffusion/poisson.py' % cmd)
eok += report(out, '...', -2, 5, '1.173819e-16', eps=1e-15)
out, err = check_output("""%s ./simple.py -c "ebc_2 : {'name' : 't2', 'region' : 'Gamma_Right', 'dofs' : {'t.0' : -5.0}}" examples/diffusion/poisson.py""" %cmd)
eok += report(out, '...', -2, 5, '2.308051e-16', eps=1e-15)
out, err = check_output('%s ./simple.py examples/diffusion/poisson_iga.py' % cmd)
eok += report(out, '...', -2, 5, '3.373487e-15', eps=1e-14)
out, err = check_output('%s ./simple.py examples/navier_stokes/stokes.py' % cmd)
eok += report(out, '...', -2, 5, '1.210678e-13', eps=1e-11)
out, err = check_output('%s ./simple.py examples/diffusion/poisson_parametric_study.py' % cmd)
eok += report(out, '...', -2, 5, '1.606408e-14', eps=1e-13)
out, err = check_output('%s ./simple.py examples/linear_elasticity/its2D_3.py' % cmd)
eok += report(out, '...', -23, 5, '3.964886e-12', eps=1e-11)
eok += report(out, '...', -3, 4, '2.58660e+01', eps=1e-5)
out, err = check_output('%s ./simple.py examples/linear_elasticity/linear_elastic.py --format h5' % cmd)
eok += report(out, '...', -2, 5, '4.638192e-18', eps=1e-15)
out, err = check_output('%s ./extractor.py -d cylinder.h5' % cmd)
eok += report(out, '...', -2, 1, '...done')
out, err = check_output('%s ./postproc.py -n --no-offscreen -o cylinder.png cylinder.h5' % cmd)
eok += report(out, '...', -3, 2, 'cylinder.png...')
out, err = check_output('%s ./phonon.py examples/phononic/band_gaps.py' % cmd)
eok += report(out, '...', -9, 2, '208.54511594')
eok += report(out, '...', -8, 1, '116309.22337295]')
out, err = check_output('%s ./phonon.py examples/phononic/band_gaps.py --phase-velocity' % cmd)
eok += report(out, '...', -2, 3, '4.1894123')
eok += report(out, '...', -2, 4, '2.62055608]')
out, err = check_output('%s ./phonon.py examples/phononic/band_gaps.py -d' % cmd)
eok += report(out, '...', -6, 1, '[0,')
out, err = check_output('%s ./phonon.py examples/phononic/band_gaps_rigid.py' % cmd)
eok += report(out, '...', -9, 2, '4.58709531e+01')
eok += report(out, '...', -8, 1, '1.13929200e+05]')
out, err = check_output('%s ./schroedinger.py --hydrogen' % cmd)
eok += report(out, '...', -4, -2, '-0.01913506', eps=1e-4)
out, err = check_output('%s ./homogen.py examples/homogenization/perfusion_micro.py' % cmd)
eok += report2(out, '...', ['computing EpA', 'computing PA_3',
'computing GA', 'computing EmA',
'computing KA'])
out, err = check_output('%s examples/homogenization/rs_correctors.py -n' % cmd)
eok += report(out, '...', -2, -1, '1.644e-01]]')
out, err = check_output('%s examples/large_deformation/compare_elastic_materials.py -n' % cmd)
eok += report(out, '...', -2, 5, '1.068759e-14', eps=1e-13)
out, err = check_output('%s examples/linear_elasticity/linear_elastic_interactive.py' % cmd)
eok += report(out, '...', -8, 0, '1.62128841139e-14', eps=1e-13)
out, err = check_output('%s examples/linear_elasticity/modal_analysis.py' % cmd)
eok += report(out, '...', -12, 5, '12142.11470773', eps=1e-13)
out, err = check_output('%s examples/multi_physics/thermal_electric.py' % cmd)
eok += report(out, '...', -3, 5, '2.612933e-14', eps=1e-13)
out, err = check_output('%s examples/diffusion/laplace_refine_interactive.py output' % cmd)
eok += report(out, '...', -2, 5, '2.675866e-15', eps=1e-13)
out, err = check_output('mpiexec -n 2 %s examples/diffusion/poisson_parallel_interactive.py output-parallel -2 --silent -ksp_monitor' % cmd)
eok += report(out, '...', -2, 4, '8.021313824020e-07', eps=1e-6)
out, err = check_output('mpiexec -n 2 %s examples/multi_physics/biot_parallel_interactive.py output-parallel -2 --silent -ksp_monitor' % cmd)
eok += report(out, '...', -2, 4, '3.787214380277e-09', eps=1e-8)
t1 = time.time()
out, err = check_output('%s ./run_tests.py' % cmd)
tok, failed = report_tests(out, return_item=True)
tok = {True : 'ok', False : 'fail'}[tok]
t2 = time.time()
fd = open('test_install_times.log', 'a+')
fd.write('%s: examples: %.2f [s] (%d), tests: %.2f [s] (%s: %s)\n'
% (time.ctime(t0), t1 - t0, eok, t2 - t1, tok, failed))
fd.close()
if __name__ == '__main__':
main()