_pkgdown.yml

---

destination: docs

reference:
- contents:
  - '`ukbkings`'

- title: Query project data
  desc: >
    Functions to inpsect the field finder (includes field, name, type), add
    fields to a one-per-line file for variables of interest, and check codes
    for categorical variables.
  contents:
  - '`bio_field`'
  - '`bio_field_add`'

- title: Create a dataframe
  desc: >
    Retrieve data for fields of interest and write as serialised dataframe.
  contents:
  - '`bio_phen`'
  - '`bio_rename`'

- title: Retrieve record-level data
  desc: >
    Functions to retrieve UKB record-level data.
  contents:
  - '`bio_record`'
  - '`bio_record_map`'

- title: Retrieve returned data
  desc: >
    Functions to retrieve UKB returned data.
  contents:
  - '`bio_return`'

- title: Retrieve coding maps and lookups
  desc: >
    Functions to retrieve UKB codings.
  contents:
  - '`bio_code`'
  - '`bio_code_primary_care`'

- title: Query genetic data
  desc: >
    Functions to inspect the genetic data available for a UKB project.
  contents:
  - '`bio_gen_ls`'
  - '`bio_gen_fam`'
  - '`bio_gen_related`'
  - '`bio_gen_related_remove`'
  - '`bio_gen_sqc`'
  - '`bio_gen_ancestry`'
  - '`bio_gen_write_plink_input`'

- title: Datasets
  desc: >
    Reference data.
  contents:
  - '`drug_dmd_antidep`'
  - '`drug_pharmgkb`'
  - '`drug_gwas`'

- title: Deprecated functionality
  desc: >
    Deprecated functions.
  contents:
  - '`bio_gp`'
  - '`bio_covid`'
  - '`bio_hesin`'
  - '`bio_death`'