README.Rmd

---
output: github_document
---

```{r setup-readme, include=FALSE}
library(knitr)
opts_chunk$set( echo = TRUE, eval = FALSE, warning = FALSE, fig.path = './images/', fig.asp = 1, out.width = "50%", cache = FALSE)
opts_knit$set(root.dir = "./images/", cache.path = "./images/")
```

![](http://mixomics.org/wp-content/uploads/2019/07/MixOmics-Logo-1.png)


This package is a developing implementation of [mixOmics](https://github.com/mixOmicsTeam/mixOmics) Bioconductor package.

The aim is to:

* implement [_roxygen2_](https://cran.r-project.org/web/packages/roxygen2/index.html) documentation, and
* support [_MultiAssayExperiment_](http://bioconductor.org/packages/release/bioc/html/MultiAssayExperiment.html) datasets.
* support more intuitve input formats tailored to data integration such as `formula` class entry and support of `assay` names.


# Installation:

The package is not complete/tested yet, but feel free to try it using:

```{r}
devtools::install_github("ajabadi/mixOmics2")
```

You need to install the data package to be able to run the examples:

```{r}
devtools::install_github("ajabadi/mixOmics.data")
```


```{r, eval=TRUE, child = 'NEWS_of_README.Rmd'}
```