Update readme and doc

Author: drbecavin

README.md

@@ -27,7 +27,7 @@ More information on the [read the doc page](https://checkatlas.readthedocs.io/en
 Powered by nextflow, checkatlas can be ran in one command line:
 
 ```bash
-nextflow run nf-core-checkatlas --path search_folder/
+nextflow run nf-core-checkatlas -r dev --path search_folder/
 ```
 
 The checkatlas workflow start with a fast crawl through your working directory. It detects Seurat (.rds), Scanpy (.h5ad) or cellranger (.h5) atlas files.

docs/usage.md

@@ -3,6 +3,6 @@
 Powered by nextflow, checkatlas can be ran in one command line:
 
 ```bash
-nextflow run nf-core-checkatlas --path search_folder/
+nextflow run nf-core-checkatlas -r dev --path search_folder/
 ```