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lines changed Original file line number Diff line number Diff line change @@ -4,6 +4,30 @@ Changelog
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(unreleased)
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------------
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+ - Minor bug correction. [ drbecavin]
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+ - Merge pull request #26 from becavin-lab/rpy2. [ drbecavin]
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+
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+ Rpy2
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+ - Minor bug correction. [ drbecavin]
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+ - Fix requirements. [ drbecavin]
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+ - Fix requirements. [ drbecavin]
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+ - Fix requirements. [ drbecavin]
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+ - Run lint, clean code. [ drbecavin]
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+ - Add metrics calculation for Seurat objects (dimred not working yet)
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+ [ drbecavin]
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+ - Implement Seurat management via rpy2. Summary, adata, qc and umap/tsne
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+ is now performed with R. No conversion from seurat to scanpy is needed
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+ anymore. [ drbecavin]
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+ - Parse Cellranger files by searching for clustering and reductions in
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+ outs/analysis/ folder. [ drbecavin]
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+ - Separate search of scanpy, seurat and cellranger. Add atlas_seurat for
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+ managing Seurat object with rpy2. [ drbecavin]
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+ - Update README.md. [ drbecavin]
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+
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+ 0.0.16 (2022-07-26)
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+ -------------------
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+ - Release: version 0.0.16 🚀 [ drbecavin]
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- Improve metrics management. Add annot and dimred metrics. [ drbecavin]
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- Add Metrics management with arguments, you can specify now the metrics
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to run inside the argument list or usng config file. Fix also the use
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