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update filter_n_probes rule to also drop seq candidates with '-' #11

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conorcamplisson opened this issue Jun 15, 2022 · 0 comments
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Any homology sequence candidates that contain '-' characters will break the calc_prob and max_kmer Snakemake rules. We suspect these are introduced by sam2pairwise when >60 nt homology lengths are allowed (i.e. by modifying the blockparse_min_length and blockparse_max_length parameters inside config.yml) via invocation of its 'Hard Clipping' mode. The existing filter_n_probes Snakemake rule should be updated to also drop any sequence candidates that contain '-'.

conorcamplisson added a commit that referenced this issue Jun 15, 2022
update filter_n_probes logic to drop sequences with "-", fix #11
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