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Any homology sequence candidates that contain '-' characters will break the calc_prob and max_kmer Snakemake rules. We suspect these are introduced by sam2pairwise when >60 nt homology lengths are allowed (i.e. by modifying the blockparse_min_length and blockparse_max_length parameters inside config.yml) via invocation of its 'Hard Clipping' mode. The existing filter_n_probes Snakemake rule should be updated to also drop any sequence candidates that contain '-'.
The text was updated successfully, but these errors were encountered:
Any homology sequence candidates that contain '-' characters will break the
calc_prob
andmax_kmer
Snakemake rules. We suspect these are introduced bysam2pairwise
when >60 nt homology lengths are allowed (i.e. by modifying theblockparse_min_length
andblockparse_max_length
parameters insideconfig.yml
) via invocation of its 'Hard Clipping' mode. The existingfilter_n_probes
Snakemake rule should be updated to also drop any sequence candidates that contain '-'.The text was updated successfully, but these errors were encountered: