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remove regular expressions for enzymes.
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annotated-projects/MSV000078555/MSV000078555.sdrf.tsv
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2,580 changes: 1,290 additions & 1,290 deletions
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annotated-projects/PXD004242/PXD004242.sdrf.tsv
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2,692 changes: 1,346 additions & 1,346 deletions
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annotated-projects/PXD006003/PXD006003.sdrf.tsv
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,4 @@ | ||
| source name characteristics[organism] characteristics[organism part] characteristics[cell type] characteristics[ancestry category] characteristics[age] characteristics[sex] characteristics[disease] characteristics[biological replicate] characteristics[individual] assay name technology type comment[data file] comment[technical replicate] comment[fraction identifier] comment[associated file uri] comment[label] comment[instrument] comment[cleavage agent details] comment[precursor mass tolerance] comment[fragment mass tolerance] comment[modification parameters] comment[modification parameters] | ||
| Sample 1 Homo sapiens Cerebrospinal fluid (CSF) not applicable not available 40Y-85Y not available hydrocephalus 1 not available replicate1 proteomic profiling by mass spectrometry DIA replicate1.raw 1 1 https://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD010705/DIA%20replicate1.raw AC=MS:1002038;NT=label free sample NT=Q Exactive; AC = MS:1001911 NT=Trypsin;AC=MS:1001251; CS=(?⇐[KR])(?!P) 5 ppm 20 mmu NT= Carbamidomethyl; MT=variable; PP=Anywhere;AC=Unimod:4; TA=.; MM=57 NT=Oxidation; MT=variable; PP=Anywhere;AC=Unimod:35; TA=M; MM=15.994915 | ||
| Sample 1 Homo sapiens Cerebrospinal fluid (CSF) not applicable not available 40Y-85Y not available hydrocephalus 1 not available replicate2 proteomic profiling by mass spectrometry DIA replicate2.raw 1 1 https://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD010705/DIA%20replicate2.raw AC=MS:1002038;NT=label free sample NT=Q Exactive; AC = MS:1001911 NT=Trypsin;AC=MS:1001251; CS=(?⇐[KR])(?!P) 5 ppm 20 mmu NT= Carbamidomethyl; MT=variable; PP=Anywhere;AC=Unimod:4; TA=.; MM=57 NT=Oxidation; MT=variable; PP=Anywhere;AC=Unimod:35; TA=M; MM=15.994915 | ||
| Sample 1 Homo sapiens Cerebrospinal fluid (CSF) not applicable not available 40Y-85Y not available hydrocephalus 1 not available replicate3 proteomic profiling by mass spectrometry DIA replicate3.raw 1 1 https://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD010705/DIA%20replicate3.raw AC=MS:1002038;NT=label free sample NT=Q Exactive; AC = MS:1001911 NT=Trypsin;AC=MS:1001251; CS=(?⇐[KR])(?!P) 5 ppm 20 mmu NT= Carbamidomethyl; MT=variable; PP=Anywhere;AC=Unimod:4; TA=.; MM=57 NT=Oxidation; MT=variable; PP=Anywhere;AC=Unimod:35; TA=M; MM=15.994915 | ||
| Sample 1 Homo sapiens Cerebrospinal fluid (CSF) not applicable not available 40Y-85Y not available hydrocephalus 1 not available replicate1 proteomic profiling by mass spectrometry DIA replicate1.raw 1 1 https://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD010705/DIA%20replicate1.raw AC=MS:1002038;NT=label free sample NT=Q Exactive; AC = MS:1001911 NT=Trypsin;AC=MS:1001251 5 ppm 20 mmu NT= Carbamidomethyl; MT=variable; PP=Anywhere;AC=Unimod:4; TA=.; MM=57 NT=Oxidation; MT=variable; PP=Anywhere;AC=Unimod:35; TA=M; MM=15.994915 | ||
| Sample 1 Homo sapiens Cerebrospinal fluid (CSF) not applicable not available 40Y-85Y not available hydrocephalus 1 not available replicate2 proteomic profiling by mass spectrometry DIA replicate2.raw 1 1 https://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD010705/DIA%20replicate2.raw AC=MS:1002038;NT=label free sample NT=Q Exactive; AC = MS:1001911 NT=Trypsin;AC=MS:1001251 5 ppm 20 mmu NT= Carbamidomethyl; MT=variable; PP=Anywhere;AC=Unimod:4; TA=.; MM=57 NT=Oxidation; MT=variable; PP=Anywhere;AC=Unimod:35; TA=M; MM=15.994915 | ||
| Sample 1 Homo sapiens Cerebrospinal fluid (CSF) not applicable not available 40Y-85Y not available hydrocephalus 1 not available replicate3 proteomic profiling by mass spectrometry DIA replicate3.raw 1 1 https://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD010705/DIA%20replicate3.raw AC=MS:1002038;NT=label free sample NT=Q Exactive; AC = MS:1001911 NT=Trypsin;AC=MS:1001251 5 ppm 20 mmu NT= Carbamidomethyl; MT=variable; PP=Anywhere;AC=Unimod:4; TA=.; MM=57 NT=Oxidation; MT=variable; PP=Anywhere;AC=Unimod:35; TA=M; MM=15.994915 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,4 @@ | ||
| source name characteristics[biological replicate] characteristics[organism] characteristics[organism part] characteristics[cell type] characteristics[age] characteristics[ancestry category] characteristics[sex] characteristics[disease] characteristics[individual] characteristics[enrichment process] assay name technology type comment[cleavage agent details] comment[cleavage agent details] comment[cleavage agent details] comment[fractionation method] comment[fraction identifier] comment[fragment mass tolerance] comment[precursor mass tolerance] comment[technical replicate] comment[instrument] comment[label] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[tool metadata] comment[file uri] comment[data file] factor value[disease] | ||
| fallopian tube sample 1 homo sapiens fallopian tube fallopian tube ciliated cell 43Y caucasian F cancer or benign tumor 1 NT= Extraction purification;AC=NCIT:C113061 run 1 proteomic profilling by mass spectrometry NT=Trypsin;AC=MS:1001251;CS=(?<=[KR])(?!P) NT=Lys-C;AC=MS:1001309;CS='(?<=K)(?\!P)' NT=N-glycosidase F;AC=CHMO:0002921 not applicable not applicable 0.20 Da 10 ppm 1 NT=Q Exactive HF;AC=MS:1002523 label free sample NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464;MT=Fixed;PP=Anywhere;TA=C NT=Gln->pyro-Glu;AC=28;CF=H(-3) N(-1);MM=-17.026549;MT=Variable;PP=Protein N-term;TA=Q NT=Deamidated;AC=7;CF=H(-1) N(-1) O;MM=0.984016;MT=Variable;PP=Anywhere;TA=N','Q NT=Oxidation;AC=35;CF=O;MM=15.994915;MT=Variable;PP=Anywhere;TA=M','K','P NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110 NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805 lesSDRF v0.1.0 https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201009_MSC419_1.raw 20201009_MSC419_1.raw cancer or benign tumor | ||
| fallopian tube sample 1 homo sapiens fallopian tube fallopian tube ciliated cell 43Y caucasian F cancer or benign tumor 1 NT= Extraction purification;AC=NCIT:C113061 run 2 proteomic profilling by mass spectrometry NT=Trypsin;AC=MS:1001251;CS=(?<=[KR])(?!P) NT=Lys-C;AC=MS:1001309;CS='(?<=K)(?\!P)' NT=N-glycosidase F;AC=CHMO:0002921 not applicable not applicable 0.20 Da 10 ppm 2 NT=Q Exactive HF;AC=MS:1002523 label free sample NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464;MT=Fixed;PP=Anywhere;TA=C NT=Gln->pyro-Glu;AC=28;CF=H(-3) N(-1);MM=-17.026549;MT=Variable;PP=Protein N-term;TA=Q NT=Deamidated;AC=7;CF=H(-1) N(-1) O;MM=0.984016;MT=Variable;PP=Anywhere;TA=N','Q NT=Oxidation;AC=35;CF=O;MM=15.994915;MT=Variable;PP=Anywhere;TA=M','K','P NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110 NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805 lesSDRF v0.1.0 https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201114_MSC419_1-2.raw 20201114_MSC419_1-2.raw cancer or benign tumor | ||
| fallopian tube sample 1 homo sapeins fallopian tube fallopian tube ciliated cell 43Y caucasian F cancer or benign tumor 1 NT= Extraction purification;AC=NCIT:C113061 run 3 proteomic profilling by mass spectrometry NT=Trypsin;AC=MS:1001251;CS=(?<=[KR])(?!P) NT=Lys-C;AC=MS:1001309;CS='(?<=K)(?\!P)' NT=N-glycosidase F;AC=CHMO:0002921 not applicable not applicable 0.20 Da 10 ppm 3 NT=Q Exactive HF;AC=MS:1002523 label free sample NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464;MT=Fixed;PP=Anywhere;TA=C NT=Gln->pyro-Glu;AC=28;CF=H(-3) N(-1);MM=-17.026549;MT=Variable;PP=Protein N-term;TA=Q NT=Deamidated;AC=7;CF=H(-1) N(-1) O;MM=0.984016;MT=Variable;PP=Anywhere;TA=N','Q NT=Oxidation;AC=35;CF=O;MM=15.994915;MT=Variable;PP=Anywhere;TA=M','K','P NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110 NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805 lesSDRF v0.1.0 https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201114_MSC419_1-3.raw 20201114_MSC419_1-3.raw cancer or benign tumor | ||
| fallopian tube sample 1 homo sapiens fallopian tube fallopian tube ciliated cell 43Y caucasian F cancer or benign tumor 1 NT= Extraction purification;AC=NCIT:C113061 run 1 proteomic profilling by mass spectrometry NT=Trypsin;AC=MS:1001251;CS=(?<=[KR])(?!P) NT=Lys-C;AC=MS:1001309 NT=N-glycosidase F;AC=CHMO:0002921 not applicable not applicable 0.20 Da 10 ppm 1 NT=Q Exactive HF;AC=MS:1002523 label free sample NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464;MT=Fixed;PP=Anywhere;TA=C NT=Gln->pyro-Glu;AC=28;CF=H(-3) N(-1);MM=-17.026549;MT=Variable;PP=Protein N-term;TA=Q NT=Deamidated;AC=7;CF=H(-1) N(-1) O;MM=0.984016;MT=Variable;PP=Anywhere;TA=N','Q NT=Oxidation;AC=35;CF=O;MM=15.994915;MT=Variable;PP=Anywhere;TA=M,K,P NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110 NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805 lesSDRF v0.1.0 https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201009_MSC419_1.raw 20201009_MSC419_1.raw cancer or benign tumor | ||
| fallopian tube sample 1 homo sapiens fallopian tube fallopian tube ciliated cell 43Y caucasian F cancer or benign tumor 1 NT= Extraction purification;AC=NCIT:C113061 run 2 proteomic profilling by mass spectrometry NT=Trypsin;AC=MS:1001251;CS=(?<=[KR])(?!P) NT=Lys-C;AC=MS:1001309 NT=N-glycosidase F;AC=CHMO:0002921 not applicable not applicable 0.20 Da 10 ppm 2 NT=Q Exactive HF;AC=MS:1002523 label free sample NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464;MT=Fixed;PP=Anywhere;TA=C NT=Gln->pyro-Glu;AC=28;CF=H(-3) N(-1);MM=-17.026549;MT=Variable;PP=Protein N-term;TA=Q NT=Deamidated;AC=7;CF=H(-1) N(-1) O;MM=0.984016;MT=Variable;PP=Anywhere;TA=N','Q NT=Oxidation;AC=35;CF=O;MM=15.994915;MT=Variable;PP=Anywhere;TA=M,K,P NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110 NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805 lesSDRF v0.1.0 https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201114_MSC419_1-2.raw 20201114_MSC419_1-2.raw cancer or benign tumor | ||
| fallopian tube sample 1 homo sapeins fallopian tube fallopian tube ciliated cell 43Y caucasian F cancer or benign tumor 1 NT= Extraction purification;AC=NCIT:C113061 run 3 proteomic profilling by mass spectrometry NT=Trypsin;AC=MS:1001251;CS=(?<=[KR])(?!P) NT=Lys-C;AC=MS:1001309 NT=N-glycosidase F;AC=CHMO:0002921 not applicable not applicable 0.20 Da 10 ppm 3 NT=Q Exactive HF;AC=MS:1002523 label free sample NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464;MT=Fixed;PP=Anywhere;TA=C NT=Gln->pyro-Glu;AC=28;CF=H(-3) N(-1);MM=-17.026549;MT=Variable;PP=Protein N-term;TA=Q NT=Deamidated;AC=7;CF=H(-1) N(-1) O;MM=0.984016;MT=Variable;PP=Anywhere;TA=N','Q NT=Oxidation;AC=35;CF=O;MM=15.994915;MT=Variable;PP=Anywhere;TA=M,K,P NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110 NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805 lesSDRF v0.1.0 https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201114_MSC419_1-3.raw 20201114_MSC419_1-3.raw cancer or benign tumor |