diff --git a/annotated-projects/PXD051889/PXD051889.sdrf.tsv b/annotated-projects/PXD051889/PXD051889.sdrf.tsv new file mode 100644 index 00000000..77aab685 --- /dev/null +++ b/annotated-projects/PXD051889/PXD051889.sdrf.tsv @@ -0,0 +1,17 @@ +source name characteristics[age] characteristics[ancestry category] characteristics[biological replicate] characteristics[cell type] characteristics[compound] characteristics[developmental stage] characteristics[disease] characteristics[enrichment process] characteristics[individual] characteristics[organism part] characteristics[organism] characteristics[sex] technology type assay name comment[cleavage agent details] comment[data file] comment[fraction identifier] comment[fragment mass tolerance] comment[instrument] comment[label] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[precursor mass tolerance] comment[technical replicate] comment[tool metadata] +214 Not available Not available 1 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 1 brain Mus musculus F proteomic profiling by mass spectrometry Run 1 NT=Trypsin/P QX32029GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +226 Not available Not available 2 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 2 brain Mus musculus F proteomic profiling by mass spectrometry Run 2 NT=Trypsin/P QX32032GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +229 Not available Not available 3 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 3 brain Mus musculus F proteomic profiling by mass spectrometry Run 3 NT=Trypsin/P QX32035GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +221 Not available Not available 4 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 4 brain Mus musculus M proteomic profiling by mass spectrometry Run 4 NT=Trypsin/P QX32038GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +459 Not available Not available 5 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 5 brain Mus musculus F proteomic profiling by mass spectrometry Run 5 NT=Trypsin/P QX32041GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +322 Not available Not available 6 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 6 brain Mus musculus F proteomic profiling by mass spectrometry Run 6 NT=Trypsin/P QX32044GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +223 Not available Not available 7 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 7 brain Mus musculus M proteomic profiling by mass spectrometry Run 7 NT=Trypsin/P QX32047GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +460 Not available Not available 8 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 8 brain Mus musculus F proteomic profiling by mass spectrometry Run 8 NT=Trypsin/P QX32050GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +234 Not available Not available 9 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 9 brain Mus musculus M proteomic profiling by mass spectrometry Run 9 NT=Trypsin/P QX32053GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +323 Not available Not available 10 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 10 brain Mus musculus M proteomic profiling by mass spectrometry Run 10 NT=Trypsin/P QX32056GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +227 Not available Not available 11 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 11 brain Mus musculus M proteomic profiling by mass spectrometry Run 11 NT=Trypsin/P QX32059GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +228 Not available Not available 12 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 12 brain Mus musculus M proteomic profiling by mass spectrometry Run 12 NT=Trypsin/P QX32062GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +321 Not available Not available 13 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 13 brain Mus musculus M proteomic profiling by mass spectrometry Run 13 NT=Trypsin/P QX32065GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +319 Not available Not available 14 not applicable Trametinib Not applicable Not applicable enrichment of phosphorylated protein 14 brain Mus musculus M proteomic profiling by mass spectrometry Run 14 NT=Trypsin/P QX32068GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +217 Not available Not available 15 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 15 brain Mus musculus F proteomic profiling by mass spectrometry Run 15 NT=Trypsin/P QX32071GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 +224 Not available Not available 16 not applicable Vehicle Not applicable Not applicable enrichment of phosphorylated protein 16 brain Mus musculus F proteomic profiling by mass spectrometry Run 16 NT=Trypsin/P QX32074GM 1 20 ppm Q Exactive HF-X label free sample NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C'] NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[] NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M'] NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T 4.5 ppm 1 lesSDRF v0.1.0 \ No newline at end of file