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Switch from ETLHelper to DataIntegrationHelper
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bbimber committed Apr 8, 2024
1 parent ebb2106 commit 537f81d
Showing 1 changed file with 3 additions and 11 deletions.
14 changes: 3 additions & 11 deletions PMR/test/src/org/labkey/test/tests/pmr/PMRTest.java
Original file line number Diff line number Diff line change
Expand Up @@ -17,38 +17,30 @@
package org.labkey.test.tests.pmr;

import au.com.bytecode.opencsv.CSVReader;
import org.apache.hc.client5.http.classic.methods.HttpUriRequest;
import org.junit.Assert;
import org.junit.Before;
import org.junit.BeforeClass;
import org.junit.Test;
import org.junit.experimental.categories.Category;
import org.labkey.remoteapi.Command;
import org.labkey.remoteapi.CommandResponse;
import org.labkey.remoteapi.PostCommand;
import org.labkey.remoteapi.query.SelectRowsCommand;
import org.labkey.remoteapi.query.TruncateTableCommand;
import org.labkey.serverapi.reader.Readers;
import org.labkey.test.BaseWebDriverTest;
import org.labkey.test.Locator;
import org.labkey.test.Locators;
import org.labkey.test.ModulePropertyValue;
import org.labkey.test.TestFileUtils;
import org.labkey.test.TestTimeoutException;
import org.labkey.test.WebTestHelper;
import org.labkey.test.categories.External;
import org.labkey.test.categories.LabModule;
import org.labkey.test.tests.di.ETLHelper;
import org.labkey.test.util.Ext4Helper;
import org.labkey.test.util.PipelineStatusTable;
import org.labkey.test.util.RReportHelper;
import org.labkey.test.util.RemoteConnectionHelper;
import org.labkey.test.util.SqlserverOnlyTest;
import org.labkey.test.util.di.DataIntegrationHelper;
import org.labkey.test.util.ehr.EHRClientAPIHelper;
import org.labkey.test.util.ehr.EHRTestHelper;

import java.io.File;
import java.net.URI;
import java.util.Arrays;
import java.util.Collections;
import java.util.Date;
Expand All @@ -60,7 +52,7 @@
@Category({External.class, LabModule.class})
public class PMRTest extends BaseWebDriverTest implements SqlserverOnlyTest
{
private final ETLHelper _etlHelper = new ETLHelper(this, getProjectName());
private final DataIntegrationHelper _etlHelper = new DataIntegrationHelper(getProjectName());

@Override
protected void doCleanup(boolean afterTest) throws TestTimeoutException
Expand Down Expand Up @@ -158,7 +150,7 @@ private void testKinshipEtl() throws Exception
Assert.assertEquals("Incorrect number of kinship rows", 0, select1.execute(getApiHelper().getConnection(), getProjectName()).getRowCount().intValue());

// Kick off ETL to stage data. This should also kick off a separate pipeline job to import, using geneticscore-importGeneticsData.view
_etlHelper.runETL("{PMR}/KinshipDataStaging");
_etlHelper.runTransform("{PMR}/KinshipDataStaging");
goToDataPipeline();
waitForPipelineJobsToComplete(4, "ETL Job: Import PRIMe-seq Kinship Data", false);

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