Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

nCountRNAStratification within PseudobulkSeurat has matrix vs vector related issues #257

Open
GWMcElfresh opened this issue Jun 7, 2024 · 0 comments
Open

nCountRNAStratification within PseudobulkSeurat has matrix vs vector related issues #257

GWMcElfresh opened this issue Jun 7, 2024 · 0 comments
Assignees
@GWMcElfresh
Labels
bug Something isn't working

Comments

@GWMcElfresh
Copy link
Contributor

If there's a single unsupervised cluster within a dataset (common in low-abundance celltypes or tissues with hashing problems), nCountRNAStratification will error with

unable to find an inherited method for function 'KLdiv' for signature '"numeric"'

I suspect this is because an ClusterNames x groupFields matrix intends to be formed, but gets squashed to a 1 x groupFields vector.
@GWMcElfresh GWMcElfresh added the bug Something isn't working label Jun 7, 2024
@GWMcElfresh GWMcElfresh self-assigned this Jun 7, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@GWMcElfresh GWMcElfresh

Labels
bug Something isn't working
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@GWMcElfresh