_config.yml

# Book settings
# Learn more at https://jupyterbook.org/customize/config.html

title: "Multi Omic Graph Diagnosis (MOGDx)"
author: "Barry Ryan"
logo: mogdx.png

# Force re-execution of notebooks on each build.
# See https://jupyterbook.org/content/execute.html
execute:
  execute_notebooks: 'off'

# Define the name of the latex output file for PDF builds
latex:
  latex_documents:
    targetname: book.tex

# Add a bibtex file so that we can create citations
bibtex_bibfiles:
  - references.bib

# Information about where the book exists on the web
repository:
  url: https://github.com/Barry8197/MOGDx  # Online location of your book
  path_to_book: docs  # Optional path to your book, relative to the repository root
  branch: master  # Which branch of the repository should be used when creating links (optional)

# Add GitHub buttons to your book
# See https://jupyterbook.org/customize/config.html#add-a-link-to-your-repository
html:
  use_issues_button: true
  use_repository_button: true

sphinx:
  extra_extensions:
  - 'sphinx.ext.autodoc'
  - 'sphinx.ext.napoleon'
  - 'sphinx.ext.viewcode'
  config:
    html_theme: sphinx_rtd_theme
    html_theme_options: {
    'version_selector': True,
    'language_selector': True,
    'analytics_id': 'G-Z09VV2YFE0',  #  Provided by Google in your dashboard
    'analytics_anonymize_ip': False,
    'logo_only': True,
    # Toc options
    'collapse_navigation': True,
    'sticky_navigation': True,
    'navigation_depth': 4,
    'includehidden': True,
    'titles_only': True
    }
    html_context: {
        "display_github": True, # Integrate GitHub
        "github_user": "Barry8197", # Username
        "github_repo": "MOGDxBook", # Repo name
        "github_version": "master", # Version
        "conf_py_path": "/_build/html/_sources/", # Path in the checkout to the docs root
    }
    add_module_names: True
    bibtex_reference_style: author_year
  local_extensions:
    GNN_MME : "./MOGDx/MAIN/"
    preprocess_functions : "./MOGDx/MAIN/"
    train : "./MOGDx/MAIN/"
    utils : "./MOGDx/MAIN/"