_toc.yml

# Table of contents
# Learn more at https://jupyterbook.org/customize/toc.html

format: jb-book
root: intro
parts:
  - caption: Introduction
    numbered: False
    chapters:
    - file: GettingStarted
  - caption: Data Processing
    numbered: False
    chapters:
    - file: Processing_in_R
      sections:
      - file: MOGDx/PreProcessing/R/Preprocessing
      - file: MOGDx/PreProcessing/R/Graph_Generation
      - file: MOGDx/PreProcessing/R/SNF
      - file: MOGDx/PreProcessing/R/preprocess_functions
    - file: Processing_in_Python
      sections: 
      - file: MOGDx/PreProcessing/Preprocessing
      - file: MOGDx/PreProcessing/SNF
      - file: MOGDx/MAIN/Preprocess_Functions
  - caption: MOGDx Deployment
    numbered: False
    chapters:
    - file: Executing_MOGDx
      sections:
      - file: Execution/Command_Line
      - file: Execution/mogdx
      - file: Execution/Jupyter_Notebook
  - caption: MOGDx Model Types
    numbered: False
    chapters:
    - file: MOGDx/Notebooks/MOGDx
    - file: MOGDx/Notebooks/MOGDx_PNet
    - file: MOGDx/Notebooks/MOGDx_NetGen
    - file: MOGDx/Notebooks/MOGDx_Free
  - caption: Model Development
    numbered: False
    chapters:
    - file: Training_MOGDx
      sections:
      - file: MOGDx/MAIN/GNN_MME
      - file: MOGDx/MAIN/Training
      - file: MOGDx/MAIN/Utils
  - caption: Reference
    numbered: False
    chapters:
    - file: contact
    - file: requirements