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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: d891bbc3ef9fd2c27e3402cbd44e3133
+config: 43282d600e2b0bf3649f7acfa67173fa
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/ConceptGlossary.html b/ConceptGlossary.html
@@ -201,7 +201,7 @@
 <li class="toctree-l2"><a class="reference internal" href="Section3/Part1.html"><font color="darkblue"> Part 1 : Message Passing </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="Section3/Part2.html"><font color="darkblue"> Part 2 : Problem Formulation / Patient Similarity Network Generation </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="Section3/Part3.html"><font color="darkblue"> Part 3 : Smoking Network Classification using Graph Convolutional Networks</font></a></li>
-<li class="toctree-l2"><a class="reference internal" href="Section3/Part4.html"><font color="darkblue"> Part 4 : Similarity Network Fusion with Graph Convolutional Networks</font></a></li>
+<li class="toctree-l2"><a class="reference internal" href="Section3/Part4.html">Part 4 : Similarity Network Fusion with Graph Convolutional Networks</a></li>
 </ul>
 </li>
 <li class="toctree-l1 current active"><a class="current reference internal" href="#">Concept Glossary</a></li>
@@ -260,7 +260,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test" target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -277,7 +277,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test/issues/new?title=Issue%20on%20page%20%2FConceptGlossary.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git/issues/new?title=Issue%20on%20page%20%2FConceptGlossary.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -622,7 +622,7 @@ <h2>Transcriptomics<a class="headerlink" href="#transcriptomics" title="Permalin
       <i class="fa-solid fa-angle-left"></i>
       <div class="prev-next-info">
         <p class="prev-next-subtitle">previous</p>
-        <p class="prev-next-title"><font color='darkblue'> Part 4 : Similarity Network Fusion with Graph Convolutional Networks</font></p>
+        <p class="prev-next-title">Part 4 : Similarity Network Fusion with Graph Convolutional Networks</p>
       </div>
     </a>
     <a class="right-next"

diff --git a/GettingStarted.html b/GettingStarted.html
@@ -201,7 +201,7 @@
 <li class="toctree-l2"><a class="reference internal" href="Section3/Part1.html"><font color="darkblue"> Part 1 : Message Passing </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="Section3/Part2.html"><font color="darkblue"> Part 2 : Problem Formulation / Patient Similarity Network Generation </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="Section3/Part3.html"><font color="darkblue"> Part 3 : Smoking Network Classification using Graph Convolutional Networks</font></a></li>
-<li class="toctree-l2"><a class="reference internal" href="Section3/Part4.html"><font color="darkblue"> Part 4 : Similarity Network Fusion with Graph Convolutional Networks</font></a></li>
+<li class="toctree-l2"><a class="reference internal" href="Section3/Part4.html">Part 4 : Similarity Network Fusion with Graph Convolutional Networks</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="ConceptGlossary.html">Concept Glossary</a></li>
@@ -260,7 +260,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test" target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -277,7 +277,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test/issues/new?title=Issue%20on%20page%20%2FGettingStarted.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git/issues/new?title=Issue%20on%20page%20%2FGettingStarted.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"

diff --git a/Section1/Part1.html b/Section1/Part1.html
@@ -201,7 +201,7 @@
 <li class="toctree-l2"><a class="reference internal" href="../Section3/Part1.html"><font color="darkblue"> Part 1 : Message Passing </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="../Section3/Part2.html"><font color="darkblue"> Part 2 : Problem Formulation / Patient Similarity Network Generation </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="../Section3/Part3.html"><font color="darkblue"> Part 3 : Smoking Network Classification using Graph Convolutional Networks</font></a></li>
-<li class="toctree-l2"><a class="reference internal" href="../Section3/Part4.html"><font color="darkblue"> Part 4 : Similarity Network Fusion with Graph Convolutional Networks</font></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../Section3/Part4.html">Part 4 : Similarity Network Fusion with Graph Convolutional Networks</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../ConceptGlossary.html">Concept Glossary</a></li>
@@ -260,7 +260,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test" target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -277,7 +277,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test/issues/new?title=Issue%20on%20page%20%2FSection1/Part1.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git/issues/new?title=Issue%20on%20page%20%2FSection1/Part1.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"

diff --git a/Section1/Part2.html b/Section1/Part2.html
@@ -201,7 +201,7 @@
 <li class="toctree-l2"><a class="reference internal" href="../Section3/Part1.html"><font color="darkblue"> Part 1 : Message Passing </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="../Section3/Part2.html"><font color="darkblue"> Part 2 : Problem Formulation / Patient Similarity Network Generation </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="../Section3/Part3.html"><font color="darkblue"> Part 3 : Smoking Network Classification using Graph Convolutional Networks</font></a></li>
-<li class="toctree-l2"><a class="reference internal" href="../Section3/Part4.html"><font color="darkblue"> Part 4 : Similarity Network Fusion with Graph Convolutional Networks</font></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../Section3/Part4.html">Part 4 : Similarity Network Fusion with Graph Convolutional Networks</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../ConceptGlossary.html">Concept Glossary</a></li>
@@ -260,7 +260,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test" target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -277,7 +277,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test/issues/new?title=Issue%20on%20page%20%2FSection1/Part2.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git/issues/new?title=Issue%20on%20page%20%2FSection1/Part2.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"

diff --git a/Section1_intro.html b/Section1_intro.html
@@ -201,7 +201,7 @@
 <li class="toctree-l2"><a class="reference internal" href="Section3/Part1.html"><font color="darkblue"> Part 1 : Message Passing </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="Section3/Part2.html"><font color="darkblue"> Part 2 : Problem Formulation / Patient Similarity Network Generation </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="Section3/Part3.html"><font color="darkblue"> Part 3 : Smoking Network Classification using Graph Convolutional Networks</font></a></li>
-<li class="toctree-l2"><a class="reference internal" href="Section3/Part4.html"><font color="darkblue"> Part 4 : Similarity Network Fusion with Graph Convolutional Networks</font></a></li>
+<li class="toctree-l2"><a class="reference internal" href="Section3/Part4.html">Part 4 : Similarity Network Fusion with Graph Convolutional Networks</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="ConceptGlossary.html">Concept Glossary</a></li>
@@ -260,7 +260,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test" target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -277,7 +277,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test/issues/new?title=Issue%20on%20page%20%2FSection1_intro.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git/issues/new?title=Issue%20on%20page%20%2FSection1_intro.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"

diff --git a/Section2/Part1.html b/Section2/Part1.html
@@ -201,7 +201,7 @@
 <li class="toctree-l2"><a class="reference internal" href="../Section3/Part1.html"><font color="darkblue"> Part 1 : Message Passing </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="../Section3/Part2.html"><font color="darkblue"> Part 2 : Problem Formulation / Patient Similarity Network Generation </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="../Section3/Part3.html"><font color="darkblue"> Part 3 : Smoking Network Classification using Graph Convolutional Networks</font></a></li>
-<li class="toctree-l2"><a class="reference internal" href="../Section3/Part4.html"><font color="darkblue"> Part 4 : Similarity Network Fusion with Graph Convolutional Networks</font></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../Section3/Part4.html">Part 4 : Similarity Network Fusion with Graph Convolutional Networks</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../ConceptGlossary.html">Concept Glossary</a></li>
@@ -260,7 +260,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test" target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -277,7 +277,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test/issues/new?title=Issue%20on%20page%20%2FSection2/Part1.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git/issues/new?title=Issue%20on%20page%20%2FSection2/Part1.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"

diff --git a/Section2/Part2.html b/Section2/Part2.html
@@ -201,7 +201,7 @@
 <li class="toctree-l2"><a class="reference internal" href="../Section3/Part1.html"><font color="darkblue"> Part 1 : Message Passing </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="../Section3/Part2.html"><font color="darkblue"> Part 2 : Problem Formulation / Patient Similarity Network Generation </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="../Section3/Part3.html"><font color="darkblue"> Part 3 : Smoking Network Classification using Graph Convolutional Networks</font></a></li>
-<li class="toctree-l2"><a class="reference internal" href="../Section3/Part4.html"><font color="darkblue"> Part 4 : Similarity Network Fusion with Graph Convolutional Networks</font></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../Section3/Part4.html">Part 4 : Similarity Network Fusion with Graph Convolutional Networks</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../ConceptGlossary.html">Concept Glossary</a></li>
@@ -260,7 +260,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test" target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -277,7 +277,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test/issues/new?title=Issue%20on%20page%20%2FSection2/Part2.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git/issues/new?title=Issue%20on%20page%20%2FSection2/Part2.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"

diff --git a/Section2_intro.html b/Section2_intro.html
@@ -201,7 +201,7 @@
 <li class="toctree-l2"><a class="reference internal" href="Section3/Part1.html"><font color="darkblue"> Part 1 : Message Passing </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="Section3/Part2.html"><font color="darkblue"> Part 2 : Problem Formulation / Patient Similarity Network Generation </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="Section3/Part3.html"><font color="darkblue"> Part 3 : Smoking Network Classification using Graph Convolutional Networks</font></a></li>
-<li class="toctree-l2"><a class="reference internal" href="Section3/Part4.html"><font color="darkblue"> Part 4 : Similarity Network Fusion with Graph Convolutional Networks</font></a></li>
+<li class="toctree-l2"><a class="reference internal" href="Section3/Part4.html">Part 4 : Similarity Network Fusion with Graph Convolutional Networks</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="ConceptGlossary.html">Concept Glossary</a></li>
@@ -260,7 +260,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test" target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -277,7 +277,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test/issues/new?title=Issue%20on%20page%20%2FSection2_intro.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git/issues/new?title=Issue%20on%20page%20%2FSection2_intro.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"

diff --git a/Section3/Part1.html b/Section3/Part1.html
@@ -260,7 +260,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test" target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -277,7 +277,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test/issues/new?title=Issue%20on%20page%20%2FSection3/Part1.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git/issues/new?title=Issue%20on%20page%20%2FSection3/Part1.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"

diff --git a/Section3/Part2.html b/Section3/Part2.html
@@ -201,7 +201,7 @@
 <li class="toctree-l2"><a class="reference internal" href="Part1.html"><font color="darkblue"> Part 1 : Message Passing </font></a></li>
 <li class="toctree-l2 current active"><a class="current reference internal" href="#"><font color="darkblue"> Part 2 : Problem Formulation / Patient Similarity Network Generation </font></a></li>
 <li class="toctree-l2"><a class="reference internal" href="Part3.html"><font color="darkblue"> Part 3 : Smoking Network Classification using Graph Convolutional Networks</font></a></li>
-<li class="toctree-l2"><a class="reference internal" href="Part4.html"><font color="darkblue"> Part 4 : Similarity Network Fusion with Graph Convolutional Networks</font></a></li>
+<li class="toctree-l2"><a class="reference internal" href="Part4.html">Part 4 : Similarity Network Fusion with Graph Convolutional Networks</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../ConceptGlossary.html">Concept Glossary</a></li>
@@ -260,7 +260,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test" target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -277,7 +277,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test/issues/new?title=Issue%20on%20page%20%2FSection3/Part2.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git/issues/new?title=Issue%20on%20page%20%2FSection3/Part2.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"

diff --git a/Section3/Part3.html b/Section3/Part3.html
@@ -260,7 +260,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test" target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git" target="_blank"
    class="btn btn-sm btn-source-repository-button dropdown-item"
    title="Source repository"
    data-bs-placement="left" data-bs-toggle="tooltip"
@@ -277,7 +277,7 @@
 
 
 
-      <li><a href="https://github.com/Barry8197/ISMB_Test/issues/new?title=Issue%20on%20page%20%2FSection3/Part3.html&body=Your%20issue%20content%20here." target="_blank"
+      <li><a href="https://github.com/biomedicalinformaticsgroup/networks_ismb24.git/issues/new?title=Issue%20on%20page%20%2FSection3/Part3.html&body=Your%20issue%20content%20here." target="_blank"
    class="btn btn-sm btn-source-issues-button dropdown-item"
    title="Open an issue"
    data-bs-placement="left" data-bs-toggle="tooltip"