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jkobject committed Aug 29, 2022
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Expand Up @@ -53,16 +53,18 @@ Go here for some usage examples: [https://raw.githack.com/broadinstitute/cellign
> TO see the old R package installation instruction, see the `R/`folder.
Before running pip, make sure that you have R installed.
Please use an up to date version of python (>=3.8).
Note that some people have had issues with mnnpy installation and needed to have cython installed first.

`pip install celligner`

Even with R, some platform might not have all the required packages already installed (thanks R for being so easy to work with!)
Even with R, some platform might not have all the required packages already installed.

In that case, please refer to our docker image:s
In that case, please refer to our docker image (see Dockerfile)

A dockerized version is available at `jkobject:pycelligner`
The dockerized version is available at `jkobject:pycelligner`

to install the latest unstaged version of Celligner in dev mode, do:
to install the latest version of Celligner in dev mode, do:

```bash
git clone https://github.com/broadinstitute/celligner.git
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