diff --git a/README.md b/README.md index bcef39f..63b83ff 100644 --- a/README.md +++ b/README.md @@ -53,16 +53,18 @@ Go here for some usage examples: [https://raw.githack.com/broadinstitute/cellign > TO see the old R package installation instruction, see the `R/`folder. Before running pip, make sure that you have R installed. +Please use an up to date version of python (>=3.8). +Note that some people have had issues with mnnpy installation and needed to have cython installed first. `pip install celligner` -Even with R, some platform might not have all the required packages already installed (thanks R for being so easy to work with!) +Even with R, some platform might not have all the required packages already installed. -In that case, please refer to our docker image:s +In that case, please refer to our docker image (see Dockerfile) -A dockerized version is available at `jkobject:pycelligner` +The dockerized version is available at `jkobject:pycelligner` -to install the latest unstaged version of Celligner in dev mode, do: +to install the latest version of Celligner in dev mode, do: ```bash git clone https://github.com/broadinstitute/celligner.git