Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update __init__.py #7

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open

Update __init__.py #7

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions celligner/__init__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -285,6 +285,8 @@ def fit(self, X_pression=None, annotations=None, _rerun=True):

# mean center the dataframe
# TODO? a bit different from R's version as it was using an approximate fast centering method
print('BE CAREFUL! I found a bug here. it can mean-center multiple time if using addToFit()')
print('please feel free to propose an update')
self.fit_input = self.fit_input.sub(self.fit_input.mean(0), 1)
# clustering: doing SNN on the reduced data
print("clustering...")
Expand Down