update CSD3 scripts

cambiotraining · Jul 1, 2024 · b2c947e · b2c947e
1 parent 365be43
commit b2c947e
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diff --git a/course_files/csd3/slurm/drosophila_genome_indexing.sh b/course_files/csd3/slurm/drosophila_genome_indexing.sh
@@ -1,6 +1,5 @@
 #!/bin/bash
 #SBATCH -A TRAINING-CPU
-#SBATCH --reservation=training
 #SBATCH -p icelake  # name of the partition to run job on
 #SBATCH -D /home/FIX-YOUR-USERNAME/rds/hpc-work/hpc_workshop/  # working directory
 #SBATCH -o logs/drosophila_genome_indexing.log

diff --git a/course_files/csd3/slurm/estimate_pi.sh b/course_files/csd3/slurm/estimate_pi.sh
@@ -1,6 +1,5 @@
 #!/bin/bash
 #SBATCH -A TRAINING-CPU
-#SBATCH --reservation=training
 #SBATCH -p icelake  # name of the partition to run job on
 #SBATCH -D /home/FIX-YOUR-USERNAME/rds/hpc-work/hpc_workshop/  # working directory
 #SBATCH -o logs/estimate_pi.log  # standard output file

diff --git a/course_files/csd3/slurm/parallel_arrays.sh b/course_files/csd3/slurm/parallel_arrays.sh
@@ -1,6 +1,5 @@
 #!/bin/bash
 #SBATCH -A TRAINING-CPU
-#SBATCH --reservation=training
 #SBATCH -p icelake  # name of the partition to run job on
 #SBATCH -D /home/FIX-YOUR-USERNAME/rds/hpc-work/hpc_workshop/  # working directory
 #SBATCH -o logs/parallel_arrays_%a.log

diff --git a/course_files/csd3/slurm/parallel_drosophila_mapping.sh b/course_files/csd3/slurm/parallel_drosophila_mapping.sh
@@ -1,6 +1,5 @@
 #!/bin/bash
 #SBATCH -A TRAINING-CPU
-#SBATCH --reservation=training
 #SBATCH -p icelake  # name of the partition to run job on
 #SBATCH -D /home/FIX-YOUR-USERNAME/rds/hpc-work/hpc_workshop/  # working directory
 #SBATCH -o logs/drosophila_mapping_%a.log

diff --git a/course_files/csd3/slurm/parallel_estimate_pi.sh b/course_files/csd3/slurm/parallel_estimate_pi.sh
@@ -1,6 +1,5 @@
 #!/bin/bash
 #SBATCH -A TRAINING-CPU
-#SBATCH --reservation=training
 #SBATCH -p icelake  # name of the partition to run job on
 #SBATCH -D /home/FIX-YOUR-USERNAME/rds/hpc-work/hpc_workshop/  # working directory
 #SBATCH -o logs/parallel_estimate_pi_%a.log

diff --git a/course_files/csd3/slurm/parallel_turing_pattern.sh b/course_files/csd3/slurm/parallel_turing_pattern.sh
@@ -1,6 +1,5 @@
 #!/bin/bash
 #SBATCH -A TRAINING-CPU
-#SBATCH --reservation=training
 #SBATCH -p icelake  # name of the partition to run job on
 #SBATCH -D /home/FIX-YOUR-USERNAME/rds/hpc-work/hpc_workshop/  # working directory
 #SBATCH -o logs/turing_pattern_%a.log

diff --git a/course_files/csd3/slurm/seqkit_singularity.sh b/course_files/csd3/slurm/seqkit_singularity.sh
@@ -1,6 +1,5 @@
 #!/bin/bash
 #SBATCH -A TRAINING-CPU
-#SBATCH --reservation=training
 #SBATCH -p icelake  # name of the partition to run job on
 #SBATCH -D /home/FIX-YOUR-USERNAME/rds/hpc-work/hpc_workshop/  # working directory
 #SBATCH -o logs/seqkit.log  # standard output file

diff --git a/course_files/csd3/slurm/simple_job.sh b/course_files/csd3/slurm/simple_job.sh
@@ -1,6 +1,5 @@
 #!/bin/bash
 #SBATCH -A TRAINING-CPU
-#SBATCH --reservation=training
 
 sleep 60 # hold for 60 seconds