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Source  : 9a90762
Branch  : main
Author  : Graeme Grimes <graeme.grimes@ed.ac.uk>
Time    : 2024-07-23 13:57:16 +0000
Message : Merge pull request #158 from carpentries-incubator/ggrimes-patch-1

Ggrimes patch 1

Author: actions-user

04-processes-part1.md

@@ -244,8 +244,8 @@ $ nextflow run process_multi_line.nf -process.debug
 N E X T F L O W  ~  version 21.10.6
 Launching `process_multi_line.nf` [focused_jang] - revision: e32caf0dcb
 executor >  local (1)
-[00/14ce67] process > CHR_COUNT (1) [100%] 1 of 1 ✔
-Number of sequences for chromosome A:118
+[90/6e38f4] process > NUMSEQ_CHR [100%] 1 of 1 ✔
+118
 ```
 
 ::::::::::::::::::::::::::::::::::::: instructor
@@ -340,6 +340,10 @@ workflow {
 }
 ```
 
+```bash
+nextflow run process_python_script.nf -process.debug
+```
+
 ```output
 N E X T F L O W  ~  version 23.10.1
 Launching `pr.nf` [kickass_legentil] DSL2 - revision: 3b9eee1d47
@@ -421,7 +425,17 @@ workflow {
 Remember, we can change the default value of `chr` to a different value such as `B`, by running the Nextflow script using the command below. **Note:** parameters to the workflow have two hyphens `--`.
 
 ```bash
-nextflow run process_script_params.nf --chr B
+nextflow run process_script_params.nf --chr B -process.debug
+```
+
+```output
+ N E X T F L O W   ~  version 24.04.3
+
+Launching `process_script_params.nf` [pedantic_mandelbrot] DSL2 - revision: 538e3c2b38
+
+executor >  local (1)
+[19/6d96a0] process > CHR_COUNT [100%] 1 of 1 ✔
+Number of sequences for chromosome B:456
 ```
 
 :::::::::::::::::::::::::::::::::::::::  challenge
@@ -505,7 +519,7 @@ In the example below we will set a bash variable `NUMIDS` then echo the value of
 
 
 ```groovy
-
+//process_escape_bash.nf
 
 process NUM_IDS {
 

md5sum.txt

@@ -6,7 +6,7 @@
 "episodes/01-getting-started-with-nextflow.md" "5d1a504430d8c242185d119b42d257d1" "site/built/01-getting-started-with-nextflow.md" "2024-06-10"
 "episodes/02-workflow_parameters.md" "b4960a992c40d862d43cee0d95201762" "site/built/02-workflow_parameters.md" "2024-04-25"
 "episodes/03-channels.md" "9c2cd6d689955b0c2e377ca7788abd3e" "site/built/03-channels.md" "2024-05-31"
-"episodes/04-processes-part1.md" "be0b174a42ad414b816117900c69d0fb" "site/built/04-processes-part1.md" "2024-06-10"
+"episodes/04-processes-part1.md" "54f85d225365caded8db61dd5e53be9c" "site/built/04-processes-part1.md" "2024-07-23"
 "episodes/05-processes-part2.md" "b5b93cff0e547801572e8f3f4c5713f7" "site/built/05-processes-part2.md" "2024-06-10"
 "episodes/06-workflow.md" "9fa328c536dab560c108b897320a8e9a" "site/built/06-workflow.md" "2024-06-10"
 "episodes/07-operators.md" "3fd5fdf3e473d7418d6661788e002f23" "site/built/07-operators.md" "2024-04-23"