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index.html
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---
layout: default
---
<div class="home">
<div class="page-content">
The purpose of the <em>Arabidopsis</em> Small RNA Project (ASRP) website is to provide access to data and
resources from the <a href="https://www.danforthcenter.org/scientists-research/principal-investigators/james-carrington">Carrington laboratory</a>.
<br><br>
Much of the data from ASRP is also available at the
<a href="https://mpss.danforthcenter.org/">Next-Gen Sequence Databases</a> maintained by the Meyers lab.
<br><br>
Raw and processed data can be found at the Gene Expression Omnibus:
<table border="1" cellpadding="3" cellspacing="0">
<thead>
<tr>
<th scope="col" style="text-align: left; vertical-align: middle;">Title</th>
<th scope="col" style="text-align: center; vertical-align: middle;">GEO Record</th>
<th scope="col" style="text-align: center; vertical-align: middle;">PMID</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align: left; vertical-align: top; border-color: rgb(0, 0, 0); ">
<em>Arabidopsis thaliana</em> small RNAs sequences identified using high-throughput 454 sequencing technology
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6682" target="_blank">GSE6682</a>
</td>
<td style="text-align: center; vertical-align: top; border-color: rgb(0, 0, 0); ">
<a href="https://www.ncbi.nlm.nih.gov/pubmed/17298187" target="_blank">17298187</a><br>
<a href="https://www.ncbi.nlm.nih.gov/pubmed/17299599" target="_blank">17299599</a><br>
<a href="https://www.ncbi.nlm.nih.gov/pubmed/17400893" target="_blank">17400893</a>
</td>
</tr>
<tr>
<td style="text-align: left; vertical-align: top; border-color: rgb(0, 0, 0); ">
ARGONAUTE-small RNA interactions in <em>Arabidopsis thaliana</em> identified by high-throughput sequencing
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12037" target="_blank">GSE12037</a>
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/pubmed/18342362" target="_blank">18342362</a>
</td>
</tr>
<tr>
<td style="text-align: left; vertical-align: top; border-color: rgb(0, 0, 0); ">
AGO1-dependent small RNA in <em>Arabidopsis</em> identified by high-throughput sequencing
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE13605" target="_blank">GSE13605</a>
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/pubmed/19066226" target="_blank">19066226</a>
</td>
</tr>
<tr><td style="text-align: left; vertical-align: top; border-color: rgb(0, 0, 0); ">
Computational and analytical framework for small RNA profiling by high-throughput sequencing
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14696" target="_blank">GSE14696</a>
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/pubmed/19307293" target="_blank">19307293</a>
</td>
</tr>
<tr>
<td style="text-align: left; vertical-align: top; border-color: rgb(0, 0, 0); ">
Small RNA of the model grass <em>Brachypodium distachyon</em>
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20195" target="_blank">GSE20195</a>
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/pubmed/20148030" target="_blank">20148030</a><br>
<a href="https://www.ncbi.nlm.nih.gov/pubmed/24367943" target="_blank">24367943</a>
</td>
</tr>
<tr>
<td style="text-align: left; vertical-align: top; border-color: rgb(0, 0, 0); ">
Accumulation of <em>TuMV</em>-derived siRNAs in aerial parts of <em>Arabidopsis thaliana</em> plants at 7 and 10 dpi
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20197" target="_blank">GSE20197</a>
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/pubmed/20190077" target="_blank">20190077</a>
</td>
</tr>
<tr><td style="text-align: left; vertical-align: top; border-color: rgb(0, 0, 0); ">
<em>MIRNA</em> gene evolution in <em>Arabidopsis lyrata</em> and <em>Arabidopsis thaliana</em>
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20662" target="_blank">GSE20662</a>
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/pubmed/20407027" target="_blank">20407027</a>
</td>
</tr>
<tr>
<td style="text-align: left; vertical-align: top; border-color: rgb(0, 0, 0); ">
Global identification of <em>Arabidopsis thaliana</em> ARGONAUTE1-associated small RNA
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22252" target="_blank">GSE22252</a>
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/pubmed/20562854" target="_blank">20562854</a>
</td>
</tr>
<tr>
<td style="text-align: left; vertical-align: top; border-color: rgb(0, 0, 0); ">
Functional analysis of Arabidopsis ARGONAUTE1 using a slicer-defective mutant
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40259" target="_blank">GSE40259</a>
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/pubmed/23023169" target="_blank">23023169</a>
</td>
</tr>
<tr>
<td style="text-align: left; vertical-align: top; border-color: rgb(0, 0, 0); ">
<em>Phytophthora</em> have distinct endogenous small RNA populations that include short interfering and microRNAs
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50033" target="_blank">GSE50033</a>
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/pubmed/24204767" target="_blank">24204767</a>
</td>
</tr>
<tr>
<td style="text-align: left; vertical-align: top; border-color: rgb(0, 0, 0); ">
Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of <em>Brachypodium distachyon</em>
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52441" target="_blank">GSE52441</a>
</td>
<td style="vertical-align: top; border-color: rgb(0, 0, 0); text-align: center; ">
<a href="https://www.ncbi.nlm.nih.gov/pubmed/24367943" target="_blank">24367943</a>
</td>
</tr>
</tbody>
</table>
</div>
</div>