updated error in listing modules #10
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| name: Test nf-core Modules | ||
| on: | ||
| push: | ||
| branches: | ||
| - "github_actions_mza" | ||
| pull_request: | ||
| workflow_dispatch: | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| NXF_ANSI_LOG: false | ||
| jobs: | ||
| discover-modules: | ||
| # ... (keep this job as is) ... | ||
| test-modules: | ||
| needs: discover-modules | ||
| runs-on: ubuntu-latest | ||
| container: | ||
| image: nfcore/tools:latest | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| module: ${{ fromJson(needs.discover-modules.outputs.module_list) }} | ||
| name: Test nf-core Module ${{ matrix.module }} | ||
| steps: | ||
| - name: Checkout Code | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: 0 | ||
| - name: Run nf-test for ${{ matrix.module }} | ||
| run: | | ||
| echo "Testing module: ${{ matrix.module }}" | ||
| nf-test test --module ${{ matrix.module }} | ||
| - name: Upload test results | ||
| uses: actions/upload-artifact@v3 | ||
| if: always() | ||
| with: | ||
| name: nf-test-results-${{ matrix.module }} | ||
| path: .nf-test/ | ||
