updated actions.ym;

.github/actions/nf-test-action/action.yml

@@ -4,11 +4,8 @@ inputs:
   profile:
     description: "Profile to use"
     required: true
-  shard:
-    description: "Shard number for this CI job"
-    required: true
-  total_shards:
-    description: "Total number of test shards(NOT the total number of matrix jobs)"
+  component_path:
+    description: "Path to the component to test"
     required: true
   tags:
     description: "Tags to test (`<tags>[,<tags>...]`)"
@@ -57,16 +54,13 @@ runs:
         conda-solver: libmamba
         conda-remove-defaults: true
 
-    # Set up secrets
     - name: Set up nextflow secrets
       if: env.SENTIEON_ENCRYPTION_KEY != '' && env.SENTIEON_LICENSE_MESSAGE != ''
       shell: bash
       run: |
         python -m pip install cryptography
         nextflow secrets set SENTIEON_AUTH_DATA $(python3 tests/modules/nf-core/sentieon/license_message.py encrypt --key "$SENTIEON_ENCRYPTION_KEY" --message "$SENTIEON_LICENSE_MESSAGE")
 
-      # TODO Skip failing conda tests and document their failures
-      # https://github.com/nf-core/modules/issues/7017
     - name: Run nf-test
       shell: bash
       env:
@@ -75,22 +69,20 @@ runs:
         TAGS: ${{ inputs.tags && format('--tag {0}', inputs.tags) || '' }}
         NFT_WORKDIR: "~"
       run: |
+        cd ${{ inputs.component_path }}
         nf-test test \
           --profile=${{ inputs.profile }} \
           --tap=test.tap \
           --verbose \
           --ci \
-          --shard ${{ inputs.shard }}/${{ inputs.total_shards }} \
           --filter process,workflow \
           --follow-dependencies \
           ${{ env.TAGS }}
 
-      # TODO If no test.tap, then make one to spoof?
     - uses: pcolby/tap-summary@0959cbe1d4422e62afc65778cdaea6716c41d936 # v1
-      if: ${{ inputs.path != '' }}
+      if: always()
       with:
-        path: >-
-          test.tap
+        path: ${{ inputs.component_path }}/test.tap
 
     - name: Clean up
       if: always()