updated config

cidgoh · Nov 27, 2024 · b2ade4d · b2ade4d
1 parent bf6f324
commit b2ade4d
Showing 1 changed file with 63 additions and 65 deletions.
diff --git a/tests/config/nf-test.config b/tests/config/nf-test.config
@@ -1,76 +1,74 @@
-config {
-    params {
-        publish_dir_mode = "copy"
-        singularity_pull_docker_container = false
-        test_data_base = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules'
-        modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
-    }
+params {
+    publish_dir_mode = "copy"
+    singularity_pull_docker_container = false
+    test_data_base = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules'
+    modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
+}
 
-    process {
-        cpus = 4
-        memory = 6.GB
-        time = 2.h
+process {
+    cpus = 4
+    memory = 6.GB
+    time = 2.h
 
-        withName: 'FASTQC' {
-            cpus   = 4
-            memory = 6.GB
-            time   = 2.h
-        }
-        withName: 'ABRICATE_RUN' {
-            cpus   = 4
-            memory = 6.GB
-            time   = 2.h
-        }
-        withName: 'ABRICATE_SUMMARY' {
-            cpus   = 4
-            memory = 6.GB
-            time   = 2.h
-        }
+    withName: 'FASTQC' {
+        cpus   = 4
+        memory = 6.GB
+        time   = 2.h
     }
+    withName: 'ABRICATE_RUN' {
+        cpus   = 4
+        memory = 6.GB
+        time   = 2.h
+    }
+    withName: 'ABRICATE_SUMMARY' {
+        cpus   = 4
+        memory = 6.GB
+        time   = 2.h
+    }
+}
 
-    profiles {
-        singularity {
-            singularity.enabled = true
-            singularity.autoMounts = true
-        }
-        conda {
-            conda.enabled = true
-        }
-        mamba {
-            conda.enabled  = true
-            conda.useMamba = true
-        }
-        podman {
-            podman.enabled = true
-            podman.userEmulation = true
-            podman.runOptions = "--runtime crun --platform linux/x86_64 --systemd=always"
-        }
-        docker {
-            docker.enabled = true
-            docker.runOptions = '-u $(id -u):$(id -g) --platform=linux/amd64'
-        }
-        docker_self_hosted {
-            docker.enabled = true
-            docker.fixOwnership = true
-            docker.runOptions = '--platform=linux/amd64'
-        }
-        gpu {
-            docker.runOptions       = '-u $(id -u):$(id -g) --gpus all'
-            apptainer.runOptions    = '--nv'
-            singularity.runOptions  = '--nv'
-            use_gpu                 = true
-        }
+profiles {
+    singularity {
+        singularity.enabled = true
+        singularity.autoMounts = true
     }
+    conda {
+        conda.enabled = true
+    }
+    mamba {
+        conda.enabled  = true
+        conda.useMamba = true
+    }
+    podman {
+        podman.enabled = true
+        podman.userEmulation = true
+        podman.runOptions = "--runtime crun --platform linux/x86_64 --systemd=always"
+    }
+    docker {
+        docker.enabled = true
+        docker.runOptions = '-u $(id -u):$(id -g) --platform=linux/amd64'
+    }
+    docker_self_hosted {
+        docker.enabled = true
+        docker.fixOwnership = true
+        docker.runOptions = '--platform=linux/amd64'
+    }
+    gpu {
+        docker.runOptions       = '-u $(id -u):$(id -g) --gpus all'
+        apptainer.runOptions    = '--nv'
+        singularity.runOptions  = '--nv'
+        use_gpu                 = true
+    }
+}
 
-    docker.registry = 'quay.io'
-    podman.registry = 'quay.io'
-    singularity.registry = 'quay.io'
+docker.registry = 'quay.io'
+podman.registry = 'quay.io'
+singularity.registry = 'quay.io'
 
-    conda.createTimeout = "120 min"
+conda.createTimeout = "120 min"
 
-    manifest {
-        nextflowVersion = '!>=24.10.1'
-    }
+manifest {
+    nextflowVersion = '!>=24.10.1'
 }
 
 // Load test_data.config containing paths to test data