define ch_input

cidgoh · Apr 9, 2024 · bf02c58 · bf02c58
1 parent ec01d30
commit bf02c58
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/subworkflows/local/genome_annotation.nf b/subworkflows/local/genome_annotation.nf
@@ -16,7 +16,7 @@ for (param in checkPathParamList) { if (param) { file(param, checkIfExists: true
 
 // Check mandatory parameters
 // if (params.input) { ch_input = file(params.input) } else { exit 1, 'Input samplesheet not specified!' }
-
+ch_input = file(params.input)
 /*
 /*
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

diff --git a/subworkflows/local/seqqc.nf b/subworkflows/local/seqqc.nf
@@ -18,6 +18,7 @@
 
 // Check mandatory parameters
 // if (params.input) { ch_input = file(params.input) } else { exit 1, 'Input samplesheet not specified!' }
+ch_input = file(params.input)
 
 // Check if input database paths are valid
 if (!params.skip_kraken2 && !Utils.fileExists(params.kraken2_db)) {