updated config

cidgoh · Nov 27, 2024 · bf6f324 · bf6f324
1 parent 74edc20
commit bf6f324
Showing 1 changed file with 68 additions and 68 deletions.
diff --git a/tests/config/nf-test.config b/tests/config/nf-test.config
@@ -1,77 +1,77 @@
-params {
-    publish_dir_mode = "copy"
-    singularity_pull_docker_container = false
-    test_data_base = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules'
-    modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
-}
+config {
+    params {
+        publish_dir_mode = "copy"
+        singularity_pull_docker_container = false
+        test_data_base = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules'
+        modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
+    }
 
-process {
-    cpus = 4
-    memory = 6.GB
-    time = 2.h
-}
+    process {
+        cpus = 4
+        memory = 6.GB
+        time = 2.h
 
-profiles {
-    singularity {
-        singularity.enabled = true
-        singularity.autoMounts = true
-    }
-    conda {
-        conda.enabled = true
-    }
-    mamba {
-        conda.enabled  = true
-        conda.useMamba = true
+        withName: 'FASTQC' {
+            cpus   = 4
+            memory = 6.GB
+            time   = 2.h
+        }
+        withName: 'ABRICATE_RUN' {
+            cpus   = 4
+            memory = 6.GB
+            time   = 2.h
+        }
+        withName: 'ABRICATE_SUMMARY' {
+            cpus   = 4
+            memory = 6.GB
+            time   = 2.h
+        }
     }
-    podman {
-        podman.enabled = true
-        podman.userEmulation = true
-        podman.runOptions = "--runtime crun --platform linux/x86_64 --systemd=always"
-    }
-    docker {
-        docker.enabled = true
-        docker.runOptions = '-u $(id -u):$(id -g) --platform=linux/amd64'
-    }
-    docker_self_hosted {
-        docker.enabled = true
-        docker.fixOwnership = true
-        docker.runOptions = '--platform=linux/amd64'
-    }
-    gpu {
-        docker.runOptions       = '-u $(id -u):$(id -g) --gpus all'
-        apptainer.runOptions    = '--nv'
-        singularity.runOptions  = '--nv'
-        use_gpu                 = true
-    }
-}
 
-docker.registry = 'quay.io'
-podman.registry = 'quay.io'
-singularity.registry = 'quay.io'
+    profiles {
+        singularity {
+            singularity.enabled = true
+            singularity.autoMounts = true
+        }
+        conda {
+            conda.enabled = true
+        }
+        mamba {
+            conda.enabled  = true
+            conda.useMamba = true
+        }
+        podman {
+            podman.enabled = true
+            podman.userEmulation = true
+            podman.runOptions = "--runtime crun --platform linux/x86_64 --systemd=always"
+        }
+        docker {
+            docker.enabled = true
+            docker.runOptions = '-u $(id -u):$(id -g) --platform=linux/amd64'
+        }
+        docker_self_hosted {
+            docker.enabled = true
+            docker.fixOwnership = true
+            docker.runOptions = '--platform=linux/amd64'
+        }
+        gpu {
+            docker.runOptions       = '-u $(id -u):$(id -g) --gpus all'
+            apptainer.runOptions    = '--nv'
+            singularity.runOptions  = '--nv'
+            use_gpu                 = true
+        }
+    }
 
-// Increase time available to build Conda environment
-conda { createTimeout = "120 min" }
+    docker.registry = 'quay.io'
+    podman.registry = 'quay.io'
+    singularity.registry = 'quay.io'
 
-// Load test_data.config containing paths to test data
-includeConfig 'test_data.config'
+    conda.createTimeout = "120 min"
 
-manifest {
-    nextflowVersion = '!>=24.10.1'
-}
-process {
-    withName: FASTQC {
-        cpus   = { 4 }
-        memory = { 6.GB }
-        time   = { 2.h }
-    }
-    withName: ABRICATE_RUN {
-        cpus   = { 4 }
-        memory = { 6.GB }
-        time   = { 2.h }
-    }
-    withName: ABRICATE_SUMMARY {
-        cpus   = { 4 }
-        memory = { 6.GB }
-        time   = { 2.h }
+    manifest {
+        nextflowVersion = '!>=24.10.1'
     }
 }
+
+// Load test_data.config containing paths to test data
+includeConfig 'test_data.config'