fixed missing bakta db

cidgoh · Nov 20, 2024 · febb001 · febb001
1 parent e1fca5e
commit febb001
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diff --git a/.github/workflows/wf_ci.yml b/.github/workflows/wf_ci.yml
@@ -49,5 +49,6 @@ jobs:
           mkdir ./checkm_db
           mkdir ./confindr_db
           mkdir ./busco_db
+          mkdir ./bakta_db
           touch ./adapters.fa
           nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.BACPAQ_TEST_CONFIG }},docker --outdir ./results
diff --git a/conf/test.config b/conf/test.config
@@ -27,6 +27,7 @@ params {
     checkm_db = 'checkm_db'
     confindr_db = 'confindr_db'
     busco_lineages_path = 'busco_db'
+    bakta_db = 'bakta_db'
     adapter_fasta = "adapters.fa"
     skip_kreport2krona = true