- Adds tRNA dynamics as an experimental/beta feature.
- Fixes bug where RBS propensities are calculated incorrectly when manually adding transcripts to simulations.
- Makes all polymerase speed constants doubles/floats instead of ints.
- Pinetree can now simulate circular genome expression.
- Updates the catch.hpp dependency to a version that compiles on Apple M1 devices.
- Support for site-specific RNase binding constants.
- Overlapping genes and genes that overlap with ribosome binding sites are now fully supported.
- Bug fixes.
- It is now possible to simulate transcript degradation from internal and external cleavage sites.
- Fixed transcript abundances for simulating translation without transcription.
- Minor bug fixes and more informative error messages.
- More informative error message message when installation fails because cmake is not installed.
First initial release.