Skip to content

Commit

Permalink
Update documentation (#64)
Browse files Browse the repository at this point in the history
  • Loading branch information
mchamberland authored Jun 6, 2024
1 parent df3bbab commit b9ea430
Show file tree
Hide file tree
Showing 698 changed files with 15,957 additions and 12,456 deletions.
10 changes: 5 additions & 5 deletions docs/____init_____8py.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,9 +3,9 @@
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=11"/>
<meta name="generator" content="Doxygen 1.9.5"/>
<meta name="generator" content="Doxygen 1.9.8"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>EGS Brachy: /Users/marc/dev/EGSnrc/HEN_HOUSE/user_codes/egs_brachy/egs_brachy/eb_tests/__init__.py File Reference</title>
<title>EGS Brachy: /Users/marc/Developer/EGSnrc/HEN_HOUSE/user_codes/egs_brachy/egs_brachy/eb_tests/__init__.py File Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
Expand All @@ -30,7 +30,7 @@
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.9.5 -->
<!-- Generated by Doxygen 1.9.8 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
var searchBox = new SearchBox("searchBox", "search/",'.html');
Expand Down Expand Up @@ -84,13 +84,13 @@
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
Namespaces</h2></td></tr>
<tr class="memitem:namespaceeb__tests"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceeb__tests.html">eb_tests</a></td></tr>
<tr class="memitem:namespaceeb__tests" id="r_namespaceeb__tests"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceeb__tests.html">eb_tests</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
</div><!-- contents -->
<!-- start footer part -->
<hr class="footer"/><address class="footer"><small>
Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.5
Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8
</small></address>
</body>
</html>
13 changes: 9 additions & 4 deletions docs/____init_____8py_source.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,9 +3,9 @@
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=11"/>
<meta name="generator" content="Doxygen 1.9.5"/>
<meta name="generator" content="Doxygen 1.9.8"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>EGS Brachy: /Users/marc/dev/EGSnrc/HEN_HOUSE/user_codes/egs_brachy/egs_brachy/eb_tests/__init__.py Source File</title>
<title>EGS Brachy: /Users/marc/Developer/EGSnrc/HEN_HOUSE/user_codes/egs_brachy/egs_brachy/eb_tests/__init__.py Source File</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
Expand All @@ -30,7 +30,7 @@
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.9.5 -->
<!-- Generated by Doxygen 1.9.8 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
var searchBox = new SearchBox("searchBox", "search/",'.html');
Expand All @@ -47,6 +47,11 @@
/* @license-end */
</script>
<div id="main-nav"></div>
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
$(document).ready(function() { init_codefold(0); });
/* @license-end */
</script>
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
onmouseover="return searchBox.OnSearchSelectShow()"
Expand Down Expand Up @@ -81,7 +86,7 @@
</div><!-- fragment --></div><!-- contents -->
<!-- start footer part -->
<hr class="footer"/><address class="footer"><small>
Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.5
Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8
</small></address>
</body>
</html>
45 changes: 23 additions & 22 deletions docs/annotated.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=11"/>
<meta name="generator" content="Doxygen 1.9.5"/>
<meta name="generator" content="Doxygen 1.9.8"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>EGS Brachy: Class List</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
Expand All @@ -30,7 +30,7 @@
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.9.5 -->
<!-- Generated by Doxygen 1.9.8 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
var searchBox = new SearchBox("searchBox", "search/",'.html');
Expand Down Expand Up @@ -95,31 +95,32 @@
<tr id="row_6_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classEB__Phantom.html" target="_self">EB_Phantom</a></td><td class="desc">A class to represent a single phantom for scoring dose in egs_brachy </td></tr>
<tr id="row_7_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classEB__Timer.html" target="_self">EB_Timer</a></td><td class="desc"></td></tr>
<tr id="row_8_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classEB__TimingTree.html" target="_self">EB_TimingTree</a></td><td class="desc"></td></tr>
<tr id="row_9_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classEGS__Sobol.html" target="_self">EGS_Sobol</a></td><td class="desc">EGS_RandomGenerator wrapper for Sobol library </td></tr>
<tr id="row_10_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classEnergyFluenceSpectrumInVoxel.html" target="_self">EnergyFluenceSpectrumInVoxel</a></td><td class="desc">A class for scoring the energy fluence of particles enter a voxel of the scoring phantom geometry </td></tr>
<tr id="row_11_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classEnergyScoringStats.html" target="_self">EnergyScoringStats</a></td><td class="desc">Class to use for scoring information about total energy initialzed, escaping sources etc </td></tr>
<tr id="row_12_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classEnergyWeightedSurfaceSpectrum.html" target="_self">EnergyWeightedSurfaceSpectrum</a></td><td class="desc">A class for scoring the energy weighted spectrum (normalized to total radiant energy) of particles on the surface of a source geometry </td></tr>
<tr id="row_13_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classFluenceSpectrumInVoxel.html" target="_self">FluenceSpectrumInVoxel</a></td><td class="desc">A class for scoring the fluence of particles enter a voxel of the scoring phantom geometry </td></tr>
<tr id="row_14_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classGeomInfo.html" target="_self">GeomInfo</a></td><td class="desc">Container for organizing meta data about the geometries </td></tr>
<tr id="row_15_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structGeomRegionInfo.html" target="_self">GeomRegionInfo</a></td><td class="desc">Struct to contain elementary information aboud a geometry </td></tr>
<tr id="row_16_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgzstreambase.html" target="_self">gzstreambase</a></td><td class="desc"></td></tr>
<tr id="row_17_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgzstreambuf.html" target="_self">gzstreambuf</a></td><td class="desc"></td></tr>
<tr id="row_18_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classigzstream.html" target="_self">igzstream</a></td><td class="desc"></td></tr>
<tr id="row_19_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classLatch.html" target="_self">Latch</a></td><td class="desc">A class for handling latch bits relevant to egs_brachy. The <a class="el" href="classLatch.html" title="A class for handling latch bits relevant to egs_brachy. The Latch class listens for particle events a...">Latch</a> class listens for particle events and sets/unsets latch bits on the particle based on the event type </td></tr>
<tr id="row_20_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classNode.html" target="_self">Node</a></td><td class="desc"></td></tr>
<tr id="row_21_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classogzstream.html" target="_self">ogzstream</a></td><td class="desc"></td></tr>
<tr id="row_22_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classPHSPControl.html" target="_self">PHSPControl</a></td><td class="desc"></td></tr>
<tr id="row_23_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classPublisher.html" target="_self">Publisher</a></td><td class="desc"></td></tr>
<tr id="row_24_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classRecycleOpts.html" target="_self">RecycleOpts</a></td><td class="desc"></td></tr>
<tr id="row_25_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structRegionResult.html" target="_self">RegionResult</a></td><td class="desc"></td></tr>
<tr id="row_26_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classSubscriber.html" target="_self">Subscriber</a></td><td class="desc"></td></tr>
<tr id="row_27_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classSurfaceCountSpectrum.html" target="_self">SurfaceCountSpectrum</a></td><td class="desc">A class for scoring a histogram of the number of particles escaping a source geometry </td></tr>
<tr id="row_9_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classEB__UniformRunControl.html" target="_self">EB_UniformRunControl</a></td><td class="desc"></td></tr>
<tr id="row_10_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classEGS__Sobol.html" target="_self">EGS_Sobol</a></td><td class="desc">EGS_RandomGenerator wrapper for Sobol library </td></tr>
<tr id="row_11_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classEnergyFluenceSpectrumInVoxel.html" target="_self">EnergyFluenceSpectrumInVoxel</a></td><td class="desc">A class for scoring the energy fluence of particles enter a voxel of the scoring phantom geometry </td></tr>
<tr id="row_12_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classEnergyScoringStats.html" target="_self">EnergyScoringStats</a></td><td class="desc">Class to use for scoring information about total energy initialzed, escaping sources etc </td></tr>
<tr id="row_13_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classEnergyWeightedSurfaceSpectrum.html" target="_self">EnergyWeightedSurfaceSpectrum</a></td><td class="desc">A class for scoring the energy weighted spectrum (normalized to total radiant energy) of particles on the surface of a source geometry </td></tr>
<tr id="row_14_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classFluenceSpectrumInVoxel.html" target="_self">FluenceSpectrumInVoxel</a></td><td class="desc">A class for scoring the fluence of particles enter a voxel of the scoring phantom geometry </td></tr>
<tr id="row_15_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classGeomInfo.html" target="_self">GeomInfo</a></td><td class="desc">Container for organizing meta data about the geometries </td></tr>
<tr id="row_16_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structGeomRegionInfo.html" target="_self">GeomRegionInfo</a></td><td class="desc">Struct to contain elementary information aboud a geometry </td></tr>
<tr id="row_17_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgzstreambase.html" target="_self">gzstreambase</a></td><td class="desc"></td></tr>
<tr id="row_18_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgzstreambuf.html" target="_self">gzstreambuf</a></td><td class="desc"></td></tr>
<tr id="row_19_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classigzstream.html" target="_self">igzstream</a></td><td class="desc"></td></tr>
<tr id="row_20_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classLatch.html" target="_self">Latch</a></td><td class="desc">A class for handling latch bits relevant to egs_brachy. The <a class="el" href="classLatch.html" title="A class for handling latch bits relevant to egs_brachy. The Latch class listens for particle events a...">Latch</a> class listens for particle events and sets/unsets latch bits on the particle based on the event type </td></tr>
<tr id="row_21_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classNode.html" target="_self">Node</a></td><td class="desc"></td></tr>
<tr id="row_22_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classogzstream.html" target="_self">ogzstream</a></td><td class="desc"></td></tr>
<tr id="row_23_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classPHSPControl.html" target="_self">PHSPControl</a></td><td class="desc"></td></tr>
<tr id="row_24_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classPublisher.html" target="_self">Publisher</a></td><td class="desc"></td></tr>
<tr id="row_25_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classRecycleOpts.html" target="_self">RecycleOpts</a></td><td class="desc"></td></tr>
<tr id="row_26_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structRegionResult.html" target="_self">RegionResult</a></td><td class="desc"></td></tr>
<tr id="row_27_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classSubscriber.html" target="_self">Subscriber</a></td><td class="desc"></td></tr>
<tr id="row_28_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classSurfaceCountSpectrum.html" target="_self">SurfaceCountSpectrum</a></td><td class="desc">A class for scoring a histogram of the number of particles escaping a source geometry </td></tr>
</table>
</div><!-- directory -->
</div><!-- contents -->
<!-- start footer part -->
<hr class="footer"/><address class="footer"><small>
Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.5
Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8
</small></address>
</body>
</html>
Loading

0 comments on commit b9ea430

Please sign in to comment.