Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Various bug fixes #73

Merged
merged 3 commits into from
Mar 27, 2024
Merged

Various bug fixes #73

merged 3 commits into from
Mar 27, 2024

Conversation

ArthurDeclercq
Copy link
Contributor

@ArthurDeclercq ArthurDeclercq commented Mar 26, 2024

Fixed

  • Fixed _csv.Error: field larger than field limit (131072) for very large fields when reading CSV-based PSM files.
  • Pinned Pyteomics version to avoid pickling issues in multithreading (to be investigated)

@codecov-commenter
Copy link

Codecov Report

Attention: Patch coverage is 0% with 25 lines in your changes are missing coverage. Please review.

Project coverage is 0.00%. Comparing base (15b4d18) to head (8c5eef8).

Files Patch % Lines
psm_utils/io/_utils.py 0.00% 11 Missing ⚠️
psm_utils/io/ionbot.py 0.00% 2 Missing ⚠️
psm_utils/io/maxquant.py 0.00% 2 Missing ⚠️
psm_utils/io/msamanda.py 0.00% 2 Missing ⚠️
psm_utils/io/peptide_record.py 0.00% 2 Missing ⚠️
psm_utils/io/percolator.py 0.00% 2 Missing ⚠️
psm_utils/io/sage.py 0.00% 2 Missing ⚠️
psm_utils/io/tsv.py 0.00% 2 Missing ⚠️

❗ Your organization needs to install the Codecov GitHub app to enable full functionality.

Additional details and impacted files
@@          Coverage Diff          @@
##            main     #73   +/-   ##
=====================================
  Coverage   0.00%   0.00%           
=====================================
  Files         23      24    +1     
  Lines       2346    2370   +24     
=====================================
- Misses      2346    2370   +24     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@ArthurDeclercq ArthurDeclercq requested a review from RalfG March 26, 2024 13:19
@RalfG RalfG merged commit 3f32f24 into main Mar 27, 2024
5 checks passed
@RalfG RalfG deleted the bug-fix branch March 27, 2024 15:32
@RalfG RalfG changed the title Bug fixes Various bug fixes Mar 27, 2024
@RalfG RalfG modified the milestones: 0.7.4, 0.8.0 Mar 27, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants