Merge pull request #27 from holtgrewe/custom-models

Allow specification of custom classifier paths.

Author: dantaki

sv2/sv2Config.py

@@ -1,4 +1,5 @@
 #!/usr/bin/env python2
+import os.path
 from sv2_backend import dump_json,errFH,get_path,query_yes_no
 try:from configparser import ConfigParser
 except ImportError:from ConfigParser import ConfigParser
@@ -11,7 +12,10 @@ def __init__(self):
 			self.fh = Config.ini
 		else:
 			self.fh=get_path()+'/config/sv2.ini'
-		self.json=get_path()+'/config/sv2_clf.json'
+		if os.path.exists(os.path.join(os.path.dirname(self.fh), 'sv2_clf.json')):
+			self.json=os.path.join(os.path.dirname(self.fh), 'sv2_clf.json')
+		else:
+			self.json=get_path()+'/config/sv2_clf.json'
 		self.fasta_chr_flag=False
 		self.clfs=None
 		self.gtclf={} # classifiers for genotyping