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add code coverage
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MaximMoinat committed Nov 5, 2024
1 parent 1c3e9c6 commit eb1732f
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61 changes: 61 additions & 0 deletions .github/workflows/test-coverage.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]

name: test-coverage.yaml

permissions: read-all

jobs:
test-coverage:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::covr, any::xml2
needs: coverage

- name: Test coverage
run: |
cov <- covr::package_coverage(
quiet = FALSE,
clean = FALSE,
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
)
covr::to_cobertura(cov)
shell: Rscript {0}

- uses: codecov/codecov-action@v4
with:
fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
file: ./cobertura.xml
plugin: noop
disable_search: true
token: ${{ secrets.CODECOV_TOKEN }}

- name: Show testthat output
if: always()
run: |
## --------------------------------------------------------------------
find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash

- name: Upload test results
if: failure()
uses: actions/upload-artifact@v4
with:
name: coverage-test-failures
path: ${{ runner.temp }}/package
3 changes: 2 additions & 1 deletion README.md
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# CdmOnboarding
<!-- badges: start -->
[![R-CMD-check](https://github.com/darwin-eu-dev/CdmOnboarding/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/darwin-eu-dev/CdmOnboarding/actions/workflows/R-CMD-check.yaml)
[![R-CMD-check](https://github.com/darwin-eu/CdmOnboarding/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/darwin-eu/CdmOnboarding/actions/workflows/R-CMD-check.yaml)
[![codecov.io](https://codecov.io/gh/darwin-eu/CdmOnboarding/coverage.svg?branch=main)](https://app.codecov.io/gh/darwin-eu/CdmOnboarding?branch=main)
<!-- badges: end -->

R Package to support the onboarding process of new CDMs in the DARWIN EU Data Network
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