From eb1732f3ddaaee7cf21686aa122df11c8984deb5 Mon Sep 17 00:00:00 2001 From: Maxim Moinat Date: Tue, 5 Nov 2024 18:21:25 +0100 Subject: [PATCH] add code coverage --- .github/workflows/test-coverage.yaml | 61 ++++++++++++++++++++++++++++ README.md | 3 +- 2 files changed, 63 insertions(+), 1 deletion(-) create mode 100644 .github/workflows/test-coverage.yaml diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml new file mode 100644 index 0000000..448c9d2 --- /dev/null +++ b/.github/workflows/test-coverage.yaml @@ -0,0 +1,61 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: + push: + branches: [main, master] + pull_request: + branches: [main, master] + +name: test-coverage.yaml + +permissions: read-all + +jobs: + test-coverage: + runs-on: ubuntu-latest + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + + steps: + - uses: actions/checkout@v4 + + - uses: r-lib/actions/setup-r@v2 + with: + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::covr, any::xml2 + needs: coverage + + - name: Test coverage + run: | + cov <- covr::package_coverage( + quiet = FALSE, + clean = FALSE, + install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") + ) + covr::to_cobertura(cov) + shell: Rscript {0} + + - uses: codecov/codecov-action@v4 + with: + fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }} + file: ./cobertura.xml + plugin: noop + disable_search: true + token: ${{ secrets.CODECOV_TOKEN }} + + - name: Show testthat output + if: always() + run: | + ## -------------------------------------------------------------------- + find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true + shell: bash + + - name: Upload test results + if: failure() + uses: actions/upload-artifact@v4 + with: + name: coverage-test-failures + path: ${{ runner.temp }}/package \ No newline at end of file diff --git a/README.md b/README.md index a72718e..45b1741 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,7 @@ # CdmOnboarding -[![R-CMD-check](https://github.com/darwin-eu-dev/CdmOnboarding/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/darwin-eu-dev/CdmOnboarding/actions/workflows/R-CMD-check.yaml) +[![R-CMD-check](https://github.com/darwin-eu/CdmOnboarding/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/darwin-eu/CdmOnboarding/actions/workflows/R-CMD-check.yaml) +[![codecov.io](https://codecov.io/gh/darwin-eu/CdmOnboarding/coverage.svg?branch=main)](https://app.codecov.io/gh/darwin-eu/CdmOnboarding?branch=main) R Package to support the onboarding process of new CDMs in the DARWIN EU Data Network