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RPGC normalization (--normalizeUsing RPGC) is not supported with bamCompare!

Status: Open.

#1404 In deeptools/deepTools;

· ps-puneetsharma opened on May 28, 2025

The enrichment of signal values near the TSS on the sense and antisense strands

Status: Open.

#1403 In deeptools/deepTools;

· yfZhang99 opened on May 16, 2025

heatmap appears just dark but plot profiles look great

Status: Open.

#1402 In deeptools/deepTools;

· sahuno opened on May 9, 2025

how to recenter diverging color scheme

Status: Open.

#1400 In deeptools/deepTools;

· jayoung opened on May 5, 2025

installation failed of deeptools

Status: Open.

#1392 In deeptools/deepTools;

· yiwangxi-tech opened on Apr 12, 2025

Using alignmentsh can cause a bgzf_read_block error in the bam file

Status: Open.

#1388 In deeptools/deepTools;

· Zifeng0709 opened on Mar 19, 2025

AttributeError: 'list' object has no attribute 'name'

Status: Open.

#1385 In deeptools/deepTools;

· szakallasn3 opened on Mar 5, 2025

computeMatrix runs substantially slower than expected

Status: Open.

#1384 In deeptools/deepTools;

· wsowens opened on Mar 4, 2025

Modified-base probability plot using computeMAtrix and HeatMap

Status: Open.

#1383 In deeptools/deepTools;

· santoshbiowarrior333 opened on Feb 26, 2025

computeMatrix to visualize DNA methylation levels

Status: Open.

#1381 In deeptools/deepTools;

· hzauyangxin opened on Feb 21, 2025

Still numpy version issue...

Status: Open.

#1358 In deeptools/deepTools;

· zyh4482 opened on Jan 21, 2025

Wondering why many sharp peaks created in the deeptools 2.0 heatmap profile

Status: Open.

#1348 In deeptools/deepTools;

· zx0223winner opened on Dec 6, 2024