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udpate testing scripts
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Diff for: test/integration/test_load_study.sh

+10-1
Original file line numberDiff line numberDiff line change
@@ -30,6 +30,15 @@ run_in_service cbioportal 'validateData.py -v -p /cbioportal/portalinfo -s /cbio
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# load study_es_0 using API validation
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echo "Testing loading of study with API validation..."
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run_in_service cbioportal 'metaImport.py -v -u http://cbioportal-container:8080 -o -s /cbioportal/test/test_data/study_es_0/'
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run_in_service cbioportal '
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sed -i 's/db.version=.*/db.version=2.14.0/' /cbioportal-webapp/maven.properties
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# Debug: Check version after modification
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echo "Version after modification:"
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cat /cbioportal-webapp/maven.properties
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# Run the import
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metaImport.py -v -u http://cbioportal-container:8080 -o -s /cbioportal/test/test_data/study_es_0/
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'
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exit 0

Diff for: test/integration/test_update_oncokb.sh

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@@ -12,7 +12,12 @@ run_in_service() {
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# load study_es_0 using API validation
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echo "Testing update of OncoKB annotations..."
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run_in_service cbioportal 'metaImport.py -v -u http://cbioportal-container:8080 -o -s /cbioportal/test/test_data/study_oncokb_update/'
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run_in_service cbioportal '
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sed -i 's/db.version=.*/db.version=2.14.0/' /cbioportal-webapp/maven.properties
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# Debug: Check version after modification
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echo "Version after modification:"
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metaImport.py -v -u http://cbioportal-container:8080 -o -s /cbioportal/test/test_data/study_oncokb_update/'
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# execute updateOncokb script
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run_in_service cbioportal 'python3 /core/scripts/importer/updateOncokbAnnotations.py -s study_es_0 -p /cbioportal-webapp/application.properties'

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