Sync database scripts; reduce index prefix to avoid overlength issues

Author: dippindots

src/main/resources/db-scripts/cgds.sql

@@ -165,7 +165,8 @@ CREATE TABLE `patient` (
   `STABLE_ID` varchar(50) NOT NULL,
   `CANCER_STUDY_ID` int(11) NOT NULL,
   PRIMARY KEY (`INTERNAL_ID`),
-  FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE
+  FOREIGN KEY (`CANCER_STUDY_ID`) REFERENCES `cancer_study` (`CANCER_STUDY_ID`) ON DELETE CASCADE,
+  INDEX `idx_patient_stable_id` (`STABLE_ID`)
 );
 
 -- --------------------------------------------------------
@@ -175,7 +176,8 @@ CREATE TABLE `sample` (
   `SAMPLE_TYPE` varchar(255) NOT NULL,
   `PATIENT_ID` int(11) NOT NULL,
   PRIMARY KEY (`INTERNAL_ID`),
-  FOREIGN KEY (`PATIENT_ID`) REFERENCES `patient` (`INTERNAL_ID`) ON DELETE CASCADE
+  FOREIGN KEY (`PATIENT_ID`) REFERENCES `patient` (`INTERNAL_ID`) ON DELETE CASCADE,
+  INDEX `idx_sample_stable_id` (`STABLE_ID`)
 );
 
 -- --------------------------------------------------------
@@ -663,7 +665,9 @@ CREATE TABLE `clinical_event_data` (
   `CLINICAL_EVENT_ID` int(255) NOT NULL,
   `KEY` varchar(255) NOT NULL,
   `VALUE` varchar(5000) NOT NULL,
-  FOREIGN KEY (`CLINICAL_EVENT_ID`) REFERENCES `clinical_event` (`CLINICAL_EVENT_ID`) ON DELETE CASCADE
+  FOREIGN KEY (`CLINICAL_EVENT_ID`) REFERENCES `clinical_event` (`CLINICAL_EVENT_ID`) ON DELETE CASCADE,
+  INDEX `idx_clinical_event_key` (`KEY`),
+  INDEX `idx_clinical_event_value` (`VALUE`(768))
 );
 
 -- --------------------------------------------------------

src/main/resources/db-scripts/migration.sql

@@ -1024,3 +1024,10 @@ CREATE INDEX idx_clinical_event_key ON clinical_event_data (`KEY`);
 CREATE INDEX idx_clinical_event_value ON clinical_event_data (`VALUE`);
 CREATE INDEX idx_sample_stable_id ON sample (`STABLE_ID`);
 UPDATE `info` SET `DB_SCHEMA_VERSION`="2.13.1";
+
+##version: 2.13.2
+CREATE INDEX idx_patient_stable_id ON patient (`STABLE_ID`);
+ALTER TABLE clinical_event_data DROP INDEX idx_clinical_event_value;
+-- max key length is 3072 bytes, for MySQL 8 default character set utf8mb4, max characters length are 768
+CREATE INDEX idx_clinical_event_value ON clinical_event_data (`VALUE`(768));
+UPDATE `info` SET `DB_SCHEMA_VERSION`="2.13.2";