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Quartz sync: Nov 30, 2023, 11:03 AM
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dubssieg committed Nov 30, 2023
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15 changes: 14 additions & 1 deletion content/Working with graphs/Tools/gfafix.md
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---
title: GFAffix
---
Tool is referenced [here](https://github.com/marschall-lab/GFAffix)
Tool is referenced [here](https://github.com/marschall-lab/GFAffix). It aims to compress shared sequences that are distributed along multiple paths where one path should not change

# Installation
Requires rust, and is available through conda.

```bash
conda create .env-gfaffix
conda activate .env-gfaffx

conda install -c conda-forge rust
conda install -c bioconda gfaffix

conda deactivate
```

To run GFAffix, the command is: `gfaffix <input_gfa> -o <output_gfa>`.

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7 changes: 1 addition & 6 deletions quartz.layout.ts
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Expand Up @@ -5,12 +5,7 @@ import * as Component from "./quartz/components"
export const sharedPageComponents: SharedLayout = {
head: Component.Head(),
header: [],
footer: Component.Footer({
links: {
GitHub: "https://github.com/jackyzha0/quartz",
"Discord Community": "https://discord.gg/cRFFHYye7t",
},
}),
footer: Component.Footer(),
}

// components for pages that display a single page (e.g. a single note)
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