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Cymon J. Cox committed Aug 19, 2024
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2 changes: 2 additions & 0 deletions .gitignore
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validation_classes/.ipynb_checkpoints/*
validation_classes/__pycache__
governance/.ipynb_checkpoints/*
logsheets/.ipynb_checkpoints/*
*.swp
616 changes: 616 additions & 0 deletions EMO-BON-metadata-validation.ipynb
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19 changes: 19 additions & 0 deletions governance/logsheets_validated.csv
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observatory_id,country,institute,water_column,soft_sediment,data_quality_control_threshold_date,data_quality_control_assignee,rocrate_profile_uri,autogenerate
ESC68N,Norway,The Arctic University of Norway (UiT),https://docs.google.com/spreadsheets/d/11_Eu0W1-sDiuzKx1cIl6YuxjRHmWezN6u9v3Ly8JZ3A/edit?usp=sharing,,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
Bergen,Norway,University of Bergen - Sars International Centre for Marine Molecular Biology (UiB-SICMMB),https://docs.google.com/spreadsheets/d/1HuXHiUJICZrmCrJ4EZDyU5aSCMzDAc1cy_tne5YVPTg/edit?usp=sharing,,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
MBAL4,UK,The Marine Biological Association (MBA),https://docs.google.com/spreadsheets/d/1xfrqraPa0auQ1O-C9RUo68RhxrPCDWkVMCAUbj79AZI/edit?usp=sharing,,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
BPNS,Belgium,Flanders Marine Institute (VLIZ),https://docs.google.com/spreadsheets/d/1mEi4Bd2YR63WD0j54FQ6QkzcUw_As9Wilue9kaXO2DE/edit?usp=sharing,https://docs.google.com/spreadsheets/d/1zc0bZdpl-Eoi35lI_5BGkElbscplyQRyNPLkSgeEyEQ/edit?usp=sharing,2023-12-31,kmexter,https://data.emobon.embrc.eu/observatory-profile/0.22,True
ROSKOGO,France,Station Biologique de Roscoff (SBR),https://docs.google.com/spreadsheets/d/1BCu2pbuIS4f-yrw5Kw4uzfO9v6ryZJBtSF5WBLWG_-E/edit?usp=sharing,https://docs.google.com/spreadsheets/d/1M0ytBWbUDP0YthGtTVtdIaX2cQUxF_uNIJBHIXREoX8/edit?usp=sharing,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
VB,France,Observatoire Océanologique de Villefranche sur mer (IMEV),https://docs.google.com/spreadsheets/d/1kSlTcNfXaCQv7fIKVbBnt5PmRW3_H7Trryh4FJHyLkE/edit?usp=sharing,,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
OOB,France,Observatoire Océanologique de Banyuls sur Mer (OOB),,https://docs.google.com/spreadsheets/d/1J469_ljfxM9NhOEyRmvWQNOXX7dujxBy1opU6ROmDv8/edit?usp=sharing,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
EMT21,Spain,Vigo University Marine Research Centre - Toralla Marine Science Station (ECIMAT-UVIGO),https://docs.google.com/spreadsheets/d/1RutVpduwL1mEed5jC2zLbs0DgkzAwZdsJ27fg3kb0Yg/edit?usp=sharing,https://docs.google.com/spreadsheets/d/1sBB0x6h-prnUHMcOfms_7qSqTn6zeGVriitTysceoT0/edit?usp=sharing,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
PiEGetxo,Spain,University of Basqua Country - Plentzia Marine Station (PiE),https://docs.google.com/spreadsheets/d/1KGcishLP5eAn6ZCnixn5wZIez1Y9MgmYoch2s7aefKM/edit?usp=sharing,,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
Plenzia,Spain,University of Basqua Country - Plentzia Marine Station (PiE),https://docs.google.com/spreadsheets/d/13XeETquTvY6F_8Re25E0BAmSxLi0mThDUXYay3Eb5-o/edit?usp=sharing,,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
RFormosa,Portugal,Centre for Marine Sciences (CCMAR),https://docs.google.com/spreadsheets/d/15f_yqrhvOr1MW-SHuv0JiKf0HRDy81uGZapJANxL54k/edit?usp=sharing,https://docs.google.com/spreadsheets/d/17rqrZ-qrDP77SpoEyBFO17wewp98a-tLBWTlBAn6ZCc/edit?usp=sharing,2023-12-31,kmexter,https://data.emobon.embrc.eu/observatory-profile/0.22,True
OSD74,Portugal,Interdisciplinary Centre of Marine and Environmental Research (CIIMAR),https://docs.google.com/spreadsheets/d/1VATpzmhwmk8sYkhEjCbDUZHRiYuNGpSRefhXthZRbfQ/edit?usp=sharing,,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
AAOT,Italy,Istituto di Scienze Marine (CNR-ISMAR),https://docs.google.com/spreadsheets/d/1hvLkBwiKTGTJDx19m_8e7qJ2lm9bwLLeVztMpxTLqnk/edit?usp=sharing,,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
NRMCB,Italy,Stazione Zoologica Anton Dohrn (SZN),https://docs.google.com/spreadsheets/d/1F4AWv_seI-DQJ_Gp_N2ziwvGyjnc4KC92GGNXrJRek4/edit?usp=sharing,https://docs.google.com/spreadsheets/d/1a19q3w2sP7dae8HEzT5TdmfqhRQQd3GItFqiYxWJlxs/edit?usp=sharing,2023-12-31,kmexter,https://data.emobon.embrc.eu/observatory-profile/0.22,True
HCMR-1,Greece,Hellenic Centre for Marine Research (HCMR),https://docs.google.com/spreadsheets/d/13DcVK2mzSxMJoFydSBaIMmj7Td1_JapEvcY2bmZTyLc/edit?usp=sharing,,2023-12-31,kmexter,https://data.emobon.embrc.eu/observatory-profile/0.22,True
IUIEilat,Israel,Interuniversity  Institute for Marine Sciences (IUI),https://docs.google.com/spreadsheets/d/1qIwi1nZu4OBiriCzn1fEG1fyG8-3wSVvwzsMiH6JTwk/edit?usp=sharing,,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
UMF,Sweden,Umea Marine Sciences Centre - Umea University (UmU),https://docs.google.com/spreadsheets/d/1-1VsUUbRtKselxu-y2BghRIrJdaf74SbmvK42ntvd20/edit#gid=2052143695,https://docs.google.com/spreadsheets/d/1DpQqo2i4q7RAM0sdm_z2pISa8SDBa9aYhWmUflFuUQs/edit?usp=drive_web&ouid=110054986816469121247,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
LMO,Sweden,Linnaeus University (LnU),https://docs.google.com/spreadsheets/d/1AvQMYcS0tdNMw6Er8zUarQg1a_wrshhnkTS6RuI1FJQ/edit#gid=2052143695,,2023-12-31,melinalou,https://data.emobon.embrc.eu/observatory-profile/0.15,True
20 changes: 20 additions & 0 deletions governance/observatories_validated.csv
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observatory_id,country_code,country,observatory_name,start_date,end_date,water_column,soft_substrates,hard_substrates,water_site_latitude,water_site_longitude,sediment_site_latitude,sediment_site_longtitude,hard_substrates_site1_longitude,hard_substrates_site1_latitude,hard_substrates_site2_longtitude,hard_substrates_site2_latitude,contact_person,contact_person_email,ena_accession_number_umbrella,ena_accession_number_project,core
BPNS,BE,Belgium,EMOBON-BE,2021-06-01,,True,True,True,51.433331,2.808331,51.433331,2.80833,51.579997,2.9933,,,Klaas Deneudt,klaas.deneudt@vliz.be,PRJEB51688,PRJEB51652,True
EMT21,ES,Spain,EMT CIM-UVIGO,2021-06-01,,True,True,True,42.201944,-8.7985,42.201944,-8.7985,42.233333,-8.783333,,,"Jose Gonzalez, Jesus Troncoso","josegonzález@uvigo.es, troncoso@uvigo.es",PRJEB51688,PRJEB51653,True
PiEGetxo,ES,Spain,PiE-UPV/EHU,2021-06-01,,True,False,True,43.338583,-3.014639,,,43.338452,-3.014833,,,Oihane Diaz De Cerio Arruabarrena,oihane.diazdecerio@ehu.eus,PRJEB51688,PRJEB51660,True
VB,FR,France,Bay of Villefranche sur Mer- southern France,2021-06-01,,True,False,True,43.683,7.317,,,43.674619,7.332372,,,Cecile Fauvelot,cecile.fauvelot@ird.fr,PRJEB51688,PRJEB51664,True
OOB,FR,France,Banyuls Observatory,2021-06-01,,False,True,False,,,42.484167,3.135278,,,,,Pierre Galand,pierre.galand@obs-banyuls.fr,PRJEB51688,PRJEB51665,True
ROSKOGO,FR,France,Roscoff Genomic Observatory,2021-06-01,,True,True,True,48.771667,-3.968333,48.771667,-3.968333,48.728719,-3.958939,48.717511,-3.966489,Fabienne Rigaut-Jalabert,fabienne.jalabert@sb-roscoff.fr,PRJEB51688,PRJEB51662,True
HCMR-1,GR,Greece,HCMR-1-UBPC,2021-06-01,,True,True,True,35.346621,25.278761,35.346621,25.27876,35.343153,25.136605,35.34662,25.27876,Melanthia Stavroulaki,mstavroulaki@hcmr.gr,PRJEB51688,PRJEB51655,True
IUIEilat1,IL,Israel,IUI,2021-06-01,,True,False,True,29.5,34.916667,,,29.5,34.9,29.52,34.93,Miguel Frada,miguel.frada@mail.huji.ac.il,PRJEB51688,PRJEB51656,True
NRMCB,IT,Italy,NEREAB,2021-06-01,,True,True,False,40.800139,14.25,40.800139,14.25,,,,,Raffaella Casotti,raffaella.casotti@szn.it,PRJEB51688,PRJEB51658,True
AAOT,IT,Italy,Acqua Alta Oceanographic Tower ,2021-06-01,,True,False,True,45.314167,12.508333,,,45.316667,12.5,,,Mauro Bastianini,mauro.bastianini@ismar.cnr.it,PRJEB51688,PRJEB50566,True
Bergen,NO,Norway,Marineholmen,2021-06-01,,True,False,False,60.269671,5.21957,,,,,,,Henrik Glenner,Henrik.Glenner@UiB.no,PRJEB51688,PRJEB50569,True
ESC68N,NO,Norway,Engenes Science Centre ,2021-06-01,,True,False,False,68.925895,17.125619,,,,,,,Kim Praebel,Kim.praebel@uit.no,PRJEB51688,PRJEB51654,True
RFormosa,PT,Portugal,Ria Formosa,2021-06-01,,True,True,False,37.005639,-7.96925,37.005639,-7.96925,,,,,Bruno Louro,blouro@ualg.pt,PRJEB51688,PRJEB51661,True
OSD74,PT,Portugal,Porto,2021-06-01,,True,False,False,41.146528,-8.666639,,,,,,,Catarina Magalhes,cmagalhaes@ciimar.up.pt,PRJEB51688,PRJEB51659,True
MBAL4,GB,United Kingdom,Plymouth Station L4 ,2021-06-01,2022-12-31,True,False,False,50.25,-4.217,,,,,,,Michael Cunliffe,micnli@mba.ac.uk,PRJEB51688,PRJEB51657,True
STHVN,GB,United Kingdom,Stonehaven,2021-06-01,2022-12-31,True,True,False,56.9635,-2.113,56.9635,-2.113,,,,,Iveta Matejusova,Iveta.Matejusova@gov.scot,PRJEB51688,PRJEB51663,True
UMF,SE,Sweden,Ore Estuary,2022-08-01,,True,True,False,63.530556,19.813611,63.009128,19.01398,,,,,Annie Marie Cox,annie.cox@umu.se,PRJEB51688,PRJEB57914,True
LMO,SE,Sweden,Linnaeus Microbial Observatory,2022-12-01,,True,False,False,56.916904,17.050178,,,,,,,Jarone Pinhassi,Jarone.pinhassi@lnu.se,PRJEB51688,PRJEB64705,True
Plenzia,ES,Spain,PiE-UPV/EHU,2023-06-01,,True,False,False,43.416151,-2.955807,,,,,,,Oihane Diaz De Cerio Arruabarrena,oihane.diazdecerio@ehu.eus,PRJEB51688,,False
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