Issue 15: Remove excess models (#28)

* Remove all models apart from latent_truncation_censoring_adjusted_delay() * Document package functions * Remove deprecated models from vignette Former-commit-id: 95362d208fef12a4483fc803037f5be578ed0a53 [formerly 1359df037333fc2a1774cfac576c02fa39bb094d] Former-commit-id: 7efe70b1c5326d209c746e12a374c11b43f25a78
epinowcast · May 13, 2024 · 6a9e66f · 6a9e66f
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commit 6a9e66f
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Showing 49 changed files with 393 additions and 643 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -4,27 +4,19 @@ export(add_natural_scale_mean_sd)
 export(calculate_censor_delay)
 export(calculate_cohort_mean)
 export(calculate_truncated_means)
-export(censoring_adjusted_delay)
 export(combine_obs)
 export(construct_cases_by_obs_window)
 export(draws_to_long)
 export(drop_zero)
-export(dynamical_censoring_adjusted_delay)
-export(dynamical_censoring_adjusted_delay_wrapper)
-export(epinowcast_delay)
 export(event_to_incidence)
 export(extract_epinowcast_draws)
 export(extract_lognormal_draws)
 export(filter_obs_by_obs_time)
 export(filter_obs_by_ptime)
-export(filtered_censoring_adjusted_delay)
-export(filtered_naive_delay)
-export(latent_censoring_adjusted_delay)
 export(latent_truncation_censoring_adjusted_delay)
 export(linelist_to_cases)
 export(linelist_to_counts)
 export(make_relative_to_truth)
-export(naive_delay)
 export(observe_process)
 export(pad_zero)
 export(plot_cases_by_obs_window)
@@ -45,8 +37,6 @@ export(simulate_secondary)
 export(simulate_uniform_cases)
 export(summarise_draws)
 export(summarise_variable)
-export(truncation_adjusted_delay)
-export(truncation_censoring_adjusted_delay)
 import(brms)
 import(cmdstanr)
 import(data.table)