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Hotfix: Link to getting started in articles drop down
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seabbs authored Feb 10, 2025
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2 changes: 1 addition & 1 deletion _pkgdown.yml
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Expand Up @@ -24,7 +24,7 @@ navbar:
- text: "──── First steps ────"
href: null
- text: "Getting started"
href: articles/getting-started.html
href: articles/primarycensored.html
- text: "──── Methodology ────"
href: null
- text: "Why it works"
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2 changes: 1 addition & 1 deletion vignettes/analytic-solutions.Rmd
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# Introduction

## What are we going to do in this Vignette
## What are we going to do in this vignette

In this vignette, we'll derive the analytic solutions for the primary censored delay distributions for a range of commonly used distributions.

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4 changes: 2 additions & 2 deletions vignettes/fitting-dists-with-fitdistrplus.Rmd
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Expand Up @@ -19,7 +19,7 @@ vignette: >

# Introduction

## What are we going to do in this Vignette
## What are we going to do in this vignette

In this vignette, we'll demonstrate how to use `primarycensored` in conjunction with `fitdistrplus` for fitting distributions. We'll cover the following key points:

Expand All @@ -33,7 +33,7 @@ In this vignette, we'll demonstrate how to use `primarycensored` in conjunction

This vignette assumes some familiarity with the `fitdistrplus` package. If you are not familiar with it then you might want to start with the [Introduction to `fitdistrplus`](https://cran.r-project.org/web/packages/fitdistrplus/vignettes/fitdistrplus_vignette.html) vignette.

## How does this vignette differ from the `vignette("fitting-dists-with-stan")`
## How does this vignette differ from fitting distributions with Stan vignette

This vignette is similar to the `vignette("fitting-dists-with-stan")` vignette in that it shows how to fit a distribution using `primarycensored`. However, here we use maximum likelihood estimation (MLE) to fit the distribution, rather than MCMC. In some settings this may result in a faster fit, but in other settings especially when the data is complex, MCMC may be more reliable. The major benefit of the `fitdistrplus` approach is that we don't need to install additional software (Stan) to fit the distribution. **Note that rather than returning credible intervals, the `fitdistrplus` package returns standard errors and confidence intervals.**

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2 changes: 1 addition & 1 deletion vignettes/fitting-dists-with-stan.Rmd
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Expand Up @@ -19,7 +19,7 @@ vignette: >

# Introduction

## What are we going to do in this Vignette
## What are we going to do in this vignette

In this vignette, we'll demonstrate how to use `primarycensored` in conjunction with Stan for Bayesian inference of epidemiological delay distributions. We'll cover the following key points:

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2 changes: 1 addition & 1 deletion vignettes/using-stan-tools.Rmd
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Expand Up @@ -20,7 +20,7 @@ vignette: >

# Introduction

## What are we going to do in this Vignette
## What are we going to do in this vignette

In this vignette, we'll explore how to use the `primarycensored` package in your Stan modelling workflow. We'll cover the following key points:

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2 changes: 1 addition & 1 deletion vignettes/why-it-works.Rmd
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Expand Up @@ -18,7 +18,7 @@ vignette: >

# Introduction

## What are we going to do in this Vignette
## What are we going to do in this vignette

In this vignette, we'll explain the statistical model that the `primarycensored` package is based on. We'll cover the following key points:

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