diff --git a/_pkgdown.yml b/_pkgdown.yml index 77ddc87..755f780 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -24,7 +24,7 @@ navbar: - text: "──── First steps ────" href: null - text: "Getting started" - href: articles/getting-started.html + href: articles/primarycensored.html - text: "──── Methodology ────" href: null - text: "Why it works" diff --git a/vignettes/analytic-solutions.Rmd b/vignettes/analytic-solutions.Rmd index 0ded48b..d1fe301 100644 --- a/vignettes/analytic-solutions.Rmd +++ b/vignettes/analytic-solutions.Rmd @@ -18,7 +18,7 @@ vignette: > # Introduction -## What are we going to do in this Vignette +## What are we going to do in this vignette In this vignette, we'll derive the analytic solutions for the primary censored delay distributions for a range of commonly used distributions. diff --git a/vignettes/fitting-dists-with-fitdistrplus.Rmd b/vignettes/fitting-dists-with-fitdistrplus.Rmd index 896ed02..b038cd1 100644 --- a/vignettes/fitting-dists-with-fitdistrplus.Rmd +++ b/vignettes/fitting-dists-with-fitdistrplus.Rmd @@ -19,7 +19,7 @@ vignette: > # Introduction -## What are we going to do in this Vignette +## What are we going to do in this vignette In this vignette, we'll demonstrate how to use `primarycensored` in conjunction with `fitdistrplus` for fitting distributions. We'll cover the following key points: @@ -33,7 +33,7 @@ In this vignette, we'll demonstrate how to use `primarycensored` in conjunction This vignette assumes some familiarity with the `fitdistrplus` package. If you are not familiar with it then you might want to start with the [Introduction to `fitdistrplus`](https://cran.r-project.org/web/packages/fitdistrplus/vignettes/fitdistrplus_vignette.html) vignette. -## How does this vignette differ from the `vignette("fitting-dists-with-stan")` +## How does this vignette differ from fitting distributions with Stan vignette This vignette is similar to the `vignette("fitting-dists-with-stan")` vignette in that it shows how to fit a distribution using `primarycensored`. However, here we use maximum likelihood estimation (MLE) to fit the distribution, rather than MCMC. In some settings this may result in a faster fit, but in other settings especially when the data is complex, MCMC may be more reliable. The major benefit of the `fitdistrplus` approach is that we don't need to install additional software (Stan) to fit the distribution. **Note that rather than returning credible intervals, the `fitdistrplus` package returns standard errors and confidence intervals.** diff --git a/vignettes/fitting-dists-with-stan.Rmd b/vignettes/fitting-dists-with-stan.Rmd index 97a7683..d345dc0 100644 --- a/vignettes/fitting-dists-with-stan.Rmd +++ b/vignettes/fitting-dists-with-stan.Rmd @@ -19,7 +19,7 @@ vignette: > # Introduction -## What are we going to do in this Vignette +## What are we going to do in this vignette In this vignette, we'll demonstrate how to use `primarycensored` in conjunction with Stan for Bayesian inference of epidemiological delay distributions. We'll cover the following key points: diff --git a/vignettes/using-stan-tools.Rmd b/vignettes/using-stan-tools.Rmd index 601bb25..4b0355a 100644 --- a/vignettes/using-stan-tools.Rmd +++ b/vignettes/using-stan-tools.Rmd @@ -20,7 +20,7 @@ vignette: > # Introduction -## What are we going to do in this Vignette +## What are we going to do in this vignette In this vignette, we'll explore how to use the `primarycensored` package in your Stan modelling workflow. We'll cover the following key points: diff --git a/vignettes/why-it-works.Rmd b/vignettes/why-it-works.Rmd index cd5fdd5..8991dd0 100644 --- a/vignettes/why-it-works.Rmd +++ b/vignettes/why-it-works.Rmd @@ -18,7 +18,7 @@ vignette: > # Introduction -## What are we going to do in this Vignette +## What are we going to do in this vignette In this vignette, we'll explain the statistical model that the `primarycensored` package is based on. We'll cover the following key points: