Merge pull request #23

Fixup redundant content

Author: luraess

slide-notebooks/l9_1-projects.jl

@@ -66,7 +66,7 @@ import MPI
 #src #########################################################################
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "slide"}}
 md"""
-3. Also add global maximum computation using MPI reduction function
+3. Further, add global maximum computation using MPI reduction function to be used instead of `maximum()`
 """
 max_g(A) = (max_l = maximum(A); MPI.Allreduce(max_l, MPI.MAX, MPI.COMM_WORLD))
 
@@ -112,12 +112,7 @@ end
 #src #########################################################################
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "slide"}}
 md"""
-7. Use the `max_g` function in the timestep `dt` definition (instead of `maximum`) as one now needs to gather the global maximum among all MPI processes.
-"""
-
-#nb # %% A slide [markdown] {"slideshow": {"slide_type": "fragment"}}
-md"""
-8. Moving to the time loop, add halo update function `update_halo!` after the kernel that computes the fluid fluxes. You can additionally wrap it in the `@hide_communication` block to enable communication/computation overlap (using `b_width` defined above)
+7. Moving to the time loop, add halo update function `update_halo!` after the kernel that computes the fluid fluxes. You can additionally wrap it in the `@hide_communication` block to enable communication/computation overlap (using `b_width` defined above)
 """
 @hide_communication b_width begin
     @parallel compute_Dflux!(qDx, qDy, qDz, Pf, T, k_ηf, _dx, _dy, _dz, αρg, _1_θ_dτ_D)
@@ -127,7 +122,7 @@ end
 #src #########################################################################
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "slide"}}
 md"""
-9. Apply a similar step to the temperature update, where you can also include boundary condition computation as following (⚠️ no other construct is currently allowed)
+8. Apply a similar step to the temperature update, where you can also include boundary condition computation as following (⚠️ no other construct is currently allowed)
 """
 @hide_communication b_width begin
     @parallel update_T!(T, qTx, qTy, qTz, dTdt, _dx, _dy, _dz, _1_dt_β_dτ_T)
@@ -139,7 +134,7 @@ end
 #src #########################################################################
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "slide"}}
 md"""
-10. Use now the `max_g` function instead of `maximum` to collect the global maximum among all local arrays spanning all MPI processes.
+9. Use now the `max_g` function instead of `maximum` to collect the global maximum among all local arrays spanning all MPI processes. Use it in the timestep `dt` definition and in the error calculation (instead of `maximum`).
 """
 ## time step
 dt = if it == 1
@@ -151,12 +146,12 @@ end
 #src #########################################################################
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "slide"}}
 md"""
-11. Make sure all printing statements are only executed by `me==0` in order to avoid each MPI process to print to screen, and use `nx_g()` instead of local `nx` in the printed statements when assessing the iteration per number of grid points.
+10. Make sure all printing statements are only executed by `me==0` in order to avoid each MPI process to print to screen, and use `nx_g()` instead of local `nx` in the printed statements when assessing the iteration per number of grid points.
 """
 
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "fragment"}}
 md"""
-12. Update the visualisation and output saving part
+11. Update the visualisation and output saving part
 """
 ## visualisation
 if do_viz && (it % nvis == 0)
@@ -172,7 +167,7 @@ end
 #src #########################################################################
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "slide"}}
 md"""
-13. Finalise the global grid before returning from the main function
+12. Finalise the global grid before returning from the main function
 """
 finalize_global_grid()
 return

slide-notebooks/notebooks/l1_1-admin.ipynb

@@ -187,11 +187,11 @@
    "file_extension": ".jl",
    "mimetype": "application/julia",
    "name": "julia",
-   "version": "1.10.5"
+   "version": "1.11.1"
   },
   "kernelspec": {
-   "name": "julia-1.10",
-   "display_name": "Julia 1.10.5",
+   "name": "julia-1.11",
+   "display_name": "Julia 1.11.1",
    "language": "julia"
   }
  },

slide-notebooks/notebooks/l1_2-why-gpu.ipynb

@@ -331,11 +331,11 @@
    "file_extension": ".jl",
    "mimetype": "application/julia",
    "name": "julia",
-   "version": "1.10.5"
+   "version": "1.11.1"
   },
   "kernelspec": {
-   "name": "julia-1.10",
-   "display_name": "Julia 1.10.5",
+   "name": "julia-1.11",
+   "display_name": "Julia 1.11.1",
    "language": "julia"
   }
  },

slide-notebooks/notebooks/l1_3-julia-intro.ipynb

@@ -1533,11 +1533,11 @@
    "file_extension": ".jl",
    "mimetype": "application/julia",
    "name": "julia",
-   "version": "1.10.5"
+   "version": "1.11.1"
   },
   "kernelspec": {
-   "name": "julia-1.10",
-   "display_name": "Julia 1.10.5",
+   "name": "julia-1.11",
+   "display_name": "Julia 1.11.1",
    "language": "julia"
   }
  },

slide-notebooks/notebooks/l9_1-projects.ipynb

@@ -118,7 +118,7 @@
   {
    "cell_type": "markdown",
    "source": [
-    "3. Also add global maximum computation using MPI reduction function"
+    "3. Further, add global maximum computation using MPI reduction function to be used instead of `maximum()`"
    ],
    "metadata": {
     "name": "A slide ",
@@ -220,7 +220,7 @@
   {
    "cell_type": "markdown",
    "source": [
-    "7. Use the `max_g` function in the timestep `dt` definition (instead of `maximum`) as one now needs to gather the global maximum among all MPI processes."
+    "7. Moving to the time loop, add halo update function `update_halo!` after the kernel that computes the fluid fluxes. You can additionally wrap it in the `@hide_communication` block to enable communication/computation overlap (using `b_width` defined above)"
    ],
    "metadata": {
     "name": "A slide ",
@@ -229,18 +229,6 @@
     }
    }
   },
-  {
-   "cell_type": "markdown",
-   "source": [
-    "8. Moving to the time loop, add halo update function `update_halo!` after the kernel that computes the fluid fluxes. You can additionally wrap it in the `@hide_communication` block to enable communication/computation overlap (using `b_width` defined above)"
-   ],
-   "metadata": {
-    "name": "A slide ",
-    "slideshow": {
-     "slide_type": "fragment"
-    }
-   }
-  },
   {
    "outputs": [],
    "cell_type": "code",
@@ -256,7 +244,7 @@
   {
    "cell_type": "markdown",
    "source": [
-    "9. Apply a similar step to the temperature update, where you can also include boundary condition computation as following (⚠️ no other construct is currently allowed)"
+    "8. Apply a similar step to the temperature update, where you can also include boundary condition computation as following (⚠️ no other construct is currently allowed)"
    ],
    "metadata": {
     "name": "A slide ",
@@ -282,7 +270,7 @@
   {
    "cell_type": "markdown",
    "source": [
-    "10. Use now the `max_g` function instead of `maximum` to collect the global maximum among all local arrays spanning all MPI processes."
+    "9. Use now the `max_g` function instead of `maximum` to collect the global maximum among all local arrays spanning all MPI processes. Use it in the timestep `dt` definition and in the error calculation (instead of `maximum`)."
    ],
    "metadata": {
     "name": "A slide ",
@@ -308,7 +296,7 @@
   {
    "cell_type": "markdown",
    "source": [
-    "11. Make sure all printing statements are only executed by `me==0` in order to avoid each MPI process to print to screen, and use `nx_g()` instead of local `nx` in the printed statements when assessing the iteration per number of grid points."
+    "10. Make sure all printing statements are only executed by `me==0` in order to avoid each MPI process to print to screen, and use `nx_g()` instead of local `nx` in the printed statements when assessing the iteration per number of grid points."
    ],
    "metadata": {
     "name": "A slide ",
@@ -320,7 +308,7 @@
   {
    "cell_type": "markdown",
    "source": [
-    "12. Update the visualisation and output saving part"
+    "11. Update the visualisation and output saving part"
    ],
    "metadata": {
     "name": "A slide ",
@@ -350,7 +338,7 @@
   {
    "cell_type": "markdown",
    "source": [
-    "13. Finalise the global grid before returning from the main function"
+    "12. Finalise the global grid before returning from the main function"
    ],
    "metadata": {
     "name": "A slide ",

website/_literate/l9_1-projects_web.jl

@@ -66,7 +66,7 @@ import MPI
 #src #########################################################################
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "slide"}}
 md"""
-3. Also add global maximum computation using MPI reduction function
+3. Further, add global maximum computation using MPI reduction function to be used instead of `maximum()`
 """
 max_g(A) = (max_l = maximum(A); MPI.Allreduce(max_l, MPI.MAX, MPI.COMM_WORLD))
 
@@ -112,12 +112,7 @@ end
 #src #########################################################################
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "slide"}}
 md"""
-7. Use the `max_g` function in the timestep `dt` definition (instead of `maximum`) as one now needs to gather the global maximum among all MPI processes.
-"""
-
-#nb # %% A slide [markdown] {"slideshow": {"slide_type": "fragment"}}
-md"""
-8. Moving to the time loop, add halo update function `update_halo!` after the kernel that computes the fluid fluxes. You can additionally wrap it in the `@hide_communication` block to enable communication/computation overlap (using `b_width` defined above)
+7. Moving to the time loop, add halo update function `update_halo!` after the kernel that computes the fluid fluxes. You can additionally wrap it in the `@hide_communication` block to enable communication/computation overlap (using `b_width` defined above)
 """
 @hide_communication b_width begin
     @parallel compute_Dflux!(qDx, qDy, qDz, Pf, T, k_ηf, _dx, _dy, _dz, αρg, _1_θ_dτ_D)
@@ -127,7 +122,7 @@ end
 #src #########################################################################
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "slide"}}
 md"""
-9. Apply a similar step to the temperature update, where you can also include boundary condition computation as following (⚠️ no other construct is currently allowed)
+8. Apply a similar step to the temperature update, where you can also include boundary condition computation as following (⚠️ no other construct is currently allowed)
 """
 @hide_communication b_width begin
     @parallel update_T!(T, qTx, qTy, qTz, dTdt, _dx, _dy, _dz, _1_dt_β_dτ_T)
@@ -139,7 +134,7 @@ end
 #src #########################################################################
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "slide"}}
 md"""
-10. Use now the `max_g` function instead of `maximum` to collect the global maximum among all local arrays spanning all MPI processes.
+9. Use now the `max_g` function instead of `maximum` to collect the global maximum among all local arrays spanning all MPI processes. Use it in the timestep `dt` definition and in the error calculation (instead of `maximum`).
 """
 ## time step
 dt = if it == 1
@@ -151,12 +146,12 @@ end
 #src #########################################################################
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "slide"}}
 md"""
-11. Make sure all printing statements are only executed by `me==0` in order to avoid each MPI process to print to screen, and use `nx_g()` instead of local `nx` in the printed statements when assessing the iteration per number of grid points.
+10. Make sure all printing statements are only executed by `me==0` in order to avoid each MPI process to print to screen, and use `nx_g()` instead of local `nx` in the printed statements when assessing the iteration per number of grid points.
 """
 
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "fragment"}}
 md"""
-12. Update the visualisation and output saving part
+11. Update the visualisation and output saving part
 """
 ## visualisation
 if do_viz && (it % nvis == 0)
@@ -172,7 +167,7 @@ end
 #src #########################################################################
 #nb # %% A slide [markdown] {"slideshow": {"slide_type": "slide"}}
 md"""
-13. Finalise the global grid before returning from the main function
+12. Finalise the global grid before returning from the main function
 """
 finalize_global_grid()
 return