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## Description
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sc-MTOP is an analysis framework based on deep learning and computational pathology. It consists of two steps: 1) Nuclear segmentation and classification; 2) Feature extraction. This framework aims to characterize the tumor ecosystem diversity at the single-cell level. We have established a [demo](http://101.132.124.14/#/dashboard) website to show the functions.
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sc-MTOP is an analysis framework based on deep learning and computational pathology. It consists of two steps: 1) Nuclear segmentation and classification; 2) Feature extraction. This framework aims to characterize the tumor ecosystem diversity at the single-cell level. We have established a [demo](http://sc-mtop.biosolver.cn/) website to show the functions.
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This is the official pytorch implementation of sc-MTOP. Note that only the Nuclear segmentation and classification step supports batch processing.
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visualization
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```
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python main.py visual --feature_path='./feature/sample' --wsi_path='./wsi/sample.ndpi' --xml_path='./xml/sample.xml'
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```
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```

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