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@ga4gh

Global Alliance for Genomics and Health

An international coalition, formed to enable the sharing of genomic and clinical data.

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  1. ga4gh-schemas ga4gh-schemas Public archive

    Models and APIs for Genomic data. RETIRED 2018-01-24

    Python 218 112

  2. benchmarking-tools benchmarking-tools Public

    Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

    HTML 203 48

  3. ga4gh-server ga4gh-server Public archive

    Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

    Python 98 91

  4. vrs vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 88 36

  5. workflow-execution-service-schemas workflow-execution-service-schemas Public

    The WES API is a standard way to run and manage portable workflows.

    85 39

  6. phenopacket-schema phenopacket-schema Public

    Repository for the GA4GH phenopacket schema

    Java 85 31

Repositories

Showing 10 of 134 repositories
  • cat-vrs Public

    A terminology and data model for describing categorical variation concepts.

    Makefile 4 Apache-2.0 3 20 (3 issues need help) 0 Updated May 6, 2025
  • drs-compliance-suite Public

    Tests to verify the compliance of a DRS implementation with GA4GH DRS specification

    Python 0 Apache-2.0 1 9 4 Updated May 6, 2025
  • va-spec Public

    An information model for representing variant annotations.

    Jupyter Notebook 18 Apache-2.0 6 116 (2 issues need help) 2 Updated May 6, 2025
  • va-spec-python Public

    GA4GH Variation Annotation Python Implementation

    Python 1 Apache-2.0 2 2 1 Updated May 5, 2025
  • schema-registry Public

    Specification for schema registry API

    0 Apache-2.0 0 8 0 Updated May 4, 2025
  • gks-metaschema Public

    Tools and scripts for parsing the GKS standards metaschemas

    Python 0 Apache-2.0 2 8 (1 issue needs help) 0 Updated May 1, 2025
  • vrs-python Public

    GA4GH Variation Representation Python Implementation

    Python 56 Apache-2.0 32 53 (1 issue needs help) 4 Updated Apr 30, 2025
  • phenopacket-tools Public

    An app and library for building, conversion, and validation of GA4GH Phenopackets.

    Java 13 GPL-3.0 5 7 1 Updated Apr 30, 2025
  • quality-control-wgs Public

    Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations

    Jupyter Notebook 14 Apache-2.0 4 10 6 Updated Apr 30, 2025
  • experiments-metadata Public
    1 Apache-2.0 0 0 0 Updated Apr 29, 2025
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