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A time series analysis of water supply interruptions and cholera incidence

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gasparrini/2015_jeandron_PlosMed_Rcodedata

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A time series analysis of water supply interruptions and cholera incidence


An analysis of the association between daily variations in the volume of supplied water and incidence of suspected cholera cases in a province of the Democratic Republic of the Congo. The code reproduces the results of the time series analysis, including the investigation of the exposure-response relationship and the estimation of the excess number of cholera cases, described in the article:

Jeandron A, Saidi JM, Kapama A, Burhole M, Birembano F, Vandevelde T, Gasparrini A, Armstrong B, Cairncross S, Ensink JH. Water supply interruptions and suspected cholera incidence: a time-series regression in the Democratic Republic of the Congo. Plos Medicine. 2015;12(10):e1001893. [freely available here]


The material:

  • Dataset.csv stores the dataset used in the analysis
  • attrdl.R creates the function for computing the attributable risk measures
  • attrdl.pdf is the help page for the function attrdl()
  • Rcode.R performs the analysis

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