Skip to content

No module named 'opentree' #52

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
chenzhao-CZ opened this issue Mar 27, 2025 · 0 comments
Open

No module named 'opentree' #52

chenzhao-CZ opened this issue Mar 27, 2025 · 0 comments

Comments

@chenzhao-CZ
Copy link

I tried to install topiary through conda (https://topiary-asr.readthedocs.io/en/latest/installation.html), and no error seemed to occur. When I ran "topiary-check-installed", I got the following error message:
Traceback (most recent call last): File "/home/chen.zhao/.local/bin/topiary-check-installed", line 6, in <module> import topiary File "/home/chen.zhao/.local/lib/python3.10/site-packages/topiary/__init__.py", line 33, in <module> from . import util File "/home/chen.zhao/.local/lib/python3.10/site-packages/topiary/util/__init__.py", line 5, in <module> from .create_nicknames import create_nicknames File "/home/chen.zhao/.local/lib/python3.10/site-packages/topiary/util/create_nicknames.py", line 7, in <module> from topiary.io.paralog_patterns import load_paralog_patterns File "/home/chen.zhao/.local/lib/python3.10/site-packages/topiary/io/__init__.py", line 7, in <module> from .alignments import write_fasta File "/home/chen.zhao/.local/lib/python3.10/site-packages/topiary/io/alignments.py", line 7, in <module> from topiary.opentree.util import sort_df_by_taxa File "/home/chen.zhao/.local/lib/python3.10/site-packages/topiary/opentree/__init__.py", line 5, in <module> from .util import species_to_ott File "/home/chen.zhao/.local/lib/python3.10/site-packages/topiary/opentree/util.py", line 8, in <module> import opentree ModuleNotFoundError: No module named 'opentree'
Any idea about the solution? I really appreciate it!

Best,
Chen

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant