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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 792 160

  2. scde Public

    R package for analyzing single-cell RNA-seq data

    R 175 66

  3. viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 308 49

Repositories

Showing 10 of 375 repositories
  • pic-sure-bdc-release-control Public
    1 Apache-2.0 8 0 0 Updated May 11, 2025
  • udi-training-data Public

    code for generating training data used for fine-tuning the LLM

    Python 0 MIT 0 0 1 Updated May 11, 2025
  • udi-grammar-py Public

    Python code for generating udi-grammar specifications.

    Python 0 MIT 1 0 1 Updated May 11, 2025
  • udi-grammar Public

    The Universal Discovery Interface Grammar.

    TypeScript 3 MIT 1 0 5 Updated May 11, 2025
  • udi-dataset-review Public Forked from hms-dbmi/udi-grammar

    For reviewing the generated datasets.

    Vue 0 MIT 1 0 1 Updated May 10, 2025
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    TypeScript 1 Apache-2.0 0 0 9 Updated May 10, 2025
  • ETL-MissionControl-dbgap-submodule Public

    ETL-MissionControl-dbgap-submodule

    Python 0 Apache-2.0 0 0 0 Updated May 9, 2025
  • i2b2v2-webclient Public
    JavaScript 2 4 1 0 Updated May 9, 2025
  • gehlenborglab-website Public

    Code for HIDIVE Lab website.

    TypeScript 9 MIT 38 12 1 Updated May 9, 2025
  • pic-sure-bdc-infrastructure Public
    HCL 5 Apache-2.0 1 0 4 Updated May 9, 2025
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