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Release Candidate announcement 1.4.1rc2 (#296)
* Release Candidate announcement 1.4.1rc2 * Moved 1.4.1 into the prime position, 1.4.0 to previous stable versions. * update download sizes * update link to oanes paper
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@@ -13,57 +13,56 @@ <h2>Binaries</h2>
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<br>
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</p>
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<h3 id="stable">Version 1.4.0.post1 (10. November 2023)</h3>
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<h3 id="stable">Release Candidate 1.4.1rc2 (27. February 2025)</h3>
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<p><strong>Release Highlights:</strong></p>
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<ul>
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<li><a href="{{site.baseurl}}/documentation/nn/nn.html">Neural Network Workflow</a>: run pre-trained neural networks from <a href="https://bioimage.io">Bioimage.io Model Zoo</a> in ilastik
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<ul>
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<li>Networks can run on CPU, GPU (choose the GPU build for Windows, or Linux), or on a remote server</li>
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<li>No Neural Network training, yet - we’re working on it.</li>
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</ul>
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</li>
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<li>New startup screen!</li>
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<li>Major UI and performance improvements for the <a href="{{site.baseurl}}/documentation/multicut/multicut.html">Multicut Workflow</a></li>
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<li>Stability/Usability improvements in the <a href="{{site.baseurl}}/documentation/carving/carving.html">Carving Workflow</a></li>
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<li>By popular demand: redo/undo for brush-strokes</li>
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<li>Many bugfixes throughout</li>
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<li>Introduces support for the OME-Zarr file format</li>
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<li>Added Trainable Domain Adaptation Workflow</li>
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<li>Native build for Apple Silicon (M1, M2, M3, M4) and Intel Macs</li>
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<li>Tiff reading improvements</li>
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<li>Added spherical texture object features, contributed by Oane Gros (<a href="https://dx.plos.org/10.1371/journal.pcbi.1012349">publication</a>)</li>
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<li>Better user interface in dark mode</li>
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</ul>
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<br>
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ilastik 1.4.0 is distributed in two versions for Windows and Linux.
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In addition to our regular build, you can download GPU-enabled builds.
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With these you can <a href="{{site.baseurl}}/documentation/nn/nn.html">run pre-trained neural network models</a> from the <a href="https://bioimage.io/#/?partner=ilastik">bioimage.io Model Zoo</a> faster, if you have a compatible nvidia GPU on your system.
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All other workflows, besides the <i>Neural Network Workflow (local)</i> will work on the CPU, like before.
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<br>
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If you are interested in running the ilastik Neural Network Workflow on a <i>remote</i> GPU, e.g. if you have a powerful server in your facility, you have to check for additional installation instructions for the server part in the <a href="https://github.com/ilastik/tiktorch#tiktorch">tiktorch repository</a>.
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After you install the server part, you can use your regular ilastik installation as a client with the <i>Neural Network Workflow (remote)</i>, ilastik will take care of the communication with the server.
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<br>
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Commercial solver support with gurobi 951 for tracking with learning.
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Note that on OSX there is no 3D preview in Carving, all other functionality should work as expected.
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We recommend OSX users to download the current <a href="{{site.baseurl}}/download.html#beta">beta version</a>.
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If you have an Apple Silicon (M1/M2/M3), then please select the "Apple Silicon (arm64)" build.
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<p><strong>Notes:</strong></p>
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<ul>
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<li>Commercial solver support with gurobi <code>12.0.*</code> for tracking with learning.</li>
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<li>Native builds for Apple Silicon (M1, M2, M3, M4) and Intel Macs are available, which means better performance on these machines overall.
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Notes for the silicon version:
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<ul>
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<li>Currently only 2D networks are supported in the Neural Network and Trainable Domain Adaptation Workflows.
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These, however, run accelerated leveraging Metal Performance Shaders (mps).</li>
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</ul>
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</li>
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</ul>
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<h5>Regular builds</h5>
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<table class="table">
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<tbody>
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<tr>
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<th><i class="fa fa-windows fa-lg"></i>&nbsp;Windows (64-bit)</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.0.post1-win64.exe">version 1.4.0.post1 (547 MB)</a></td>
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<td><b>Supported Versions:</b> Windows 10</td>
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<td><a href="https://files.ilastik.org/ilastik-1.4.1rc2-win64.exe">version 1.4.1rc2 (537 MB)</a></td>
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<td><b>Supported Versions:</b> Windows 10 and up</td>
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</tr>
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<th><i class="fa fa-linux fa-lg"></i>&nbsp;Linux (64-bit)</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.0.post1-Linux.tar.bz2">version 1.4.0.post1 (857 MB)</a></td>
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<td><a href="https://files.ilastik.org/ilastik-1.4.1rc2-Linux.tar.bz2">version 1.4.1rc2 (826 MB)</a></td>
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<td><b>Supported Versions:</b> Ubuntu 14 and up </td>
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</tr>
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<tr>
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<th><i class="fa fa-apple fa-lg"></i>&nbsp;Mac (64-bit), OSX</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.0.post1-OSX.tar.bz2">version 1.4.0.post1 (739 MB)</a></td>
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<th><i class="fa fa-apple fa-lg"></i>&nbsp;Apple intel (64-bit), OSX</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.1rc2-OSX.zip">version 1.4.1rc2 (788 MB)</a></td>
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<td><b>Supported Versions:</b> 10.9 and up</td>
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</tr>
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<tr>
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<th><i class="fa fa-apple fa-lg"></i>&nbsp;Apple Silicon (arm64), OSX</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.1rc2-arm64-OSX.zip">version 1.4.1rc2 (531 MB)</a></td>
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<td><b>Supported Versions:</b> 11.0 and up</td>
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</tr>
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</tbody>
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</table>
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@@ -77,14 +76,14 @@ <h5>GPU-enabled builds</h5>
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<tbody>
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<tr>
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<th><i class="fa fa-windows fa-lg"></i>&nbsp;Windows (64-bit)</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.0.post1-gpu-win64.exe">version 1.4.0.post1-gpu (1.8 GB)</a></td>
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<td><a href="https://files.ilastik.org/ilastik-1.4.1rc2-gpu-win64.exe">version 1.4.1rc2-gpu (1.9 GB)</a></td>
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</td>
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<td><b>Supported Versions:</b> Windows 10, comes with cudatoolkit 11.3</td>
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<td><b>Supported Versions:</b> Windows 10 and up, comes with cudatoolkit 11.8</td>
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</tr>
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<tr>
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<th><i class="fa fa-linux fa-lg"></i>&nbsp;Linux (64-bit)</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.0.post1-gpu-Linux.tar.bz2">version 1.4.0.post1-gpu (2.9 GB)</a></td>
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<td><b>Supported Versions:</b> Ubuntu 14 and up, comes with cudatoolkit 11.3</td>
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<td><a href="https://files.ilastik.org/ilastik-1.4.1rc2-gpu-Linux.tar.bz2">version 1.4.1rc2-gpu (3.5 GB)</a></td>
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<td><b>Supported Versions:</b> Ubuntu 14 and up, comes with cudatoolkit 11.8</td>
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</tr>
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</tbody>
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</table>
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<br>
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<h3 id="beta">Beta Version 1.4.1b23 (14. January 2025)</h3>
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<h3 id="previous">Previous stable versions</h3>
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<div class="panel panel-danger">
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<div class="panel-heading">
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<h3 class="panel-title">macOS Big Sur and Monterey users please download ilastik 1.4.0 or newer</a></h3>
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</div>
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<div class="panel-body">
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Dear macOS users, you are running macOS 11 (Big Sur), or newer <em>please download
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the latest ilastik version (1.4.0 or newer).</em>
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Older versions don't run anymore on OSX.
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</div>
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</div>
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<h4 id="140">Version 1.4.0.post1 (10. November 2023)</h3>
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<p><strong>Release Highlights:</strong></p>
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<ul>
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<li>Added Trainable Domain Adaptation Workflow</li>
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<li>Native build for Apple Silicon (M1, M2, M3)</li>
102-
<li>Tiff reading improvements</li>
103-
<li>More responsive user interface in Multicut</li>
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<li>Added spherical texture features, contributed by Oane Gros (<a href="https://www.biorxiv.org/content/10.1101/2024.07.25.605050v1">preprint</a>)</li>
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<li>Better user interface in dark mode</li>
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<li>Introduces support for the OME-Zarr file format</li>
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<li><a href="{{site.baseurl}}/documentation/nn/nn.html">Neural Network Workflow</a>: run pre-trained neural networks from <a href="https://bioimage.io">Bioimage.io Model Zoo</a> in ilastik
115+
<ul>
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<li>Networks can run on CPU, GPU (choose the GPU build for Windows, or Linux), or on a remote server</li>
117+
<li>No Neural Network training, yet - we’re working on it.</li>
118+
</ul>
119+
</li>
120+
<li>New startup screen!</li>
121+
<li>Major UI and performance improvements for the <a href="{{site.baseurl}}/documentation/multicut/multicut.html">Multicut Workflow</a></li>
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<li>Stability/Usability improvements in the <a href="{{site.baseurl}}/documentation/carving/carving.html">Carving Workflow</a></li>
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<li>By popular demand: redo/undo for brush-strokes</li>
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<li>Many bugfixes throughout</li>
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</ul>
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<br>
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ilastik 1.4.0 is distributed in two versions for Windows and Linux.
129+
In addition to our regular build, you can download GPU-enabled builds.
130+
With these you can <a href="{{site.baseurl}}/documentation/nn/nn.html">run pre-trained neural network models</a> from the <a href="https://bioimage.io/#/?partner=ilastik">bioimage.io Model Zoo</a> faster, if you have a compatible nvidia GPU on your system.
131+
All other workflows, besides the <i>Neural Network Workflow (local)</i> will work on the CPU, like before.
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<br>
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If you are interested in running the ilastik Neural Network Workflow on a <i>remote</i> GPU, e.g. if you have a powerful server in your facility, you have to check for additional installation instructions for the server part in the <a href="https://github.com/ilastik/tiktorch#tiktorch">tiktorch repository</a>.
134+
After you install the server part, you can use your regular ilastik installation as a client with the <i>Neural Network Workflow (remote)</i>, ilastik will take care of the communication with the server.
135+
<br>
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Commercial solver support with gurobi 951 for tracking with learning.
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<p><strong>Notes:</strong></p>
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<ul>
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<li>Commercial solver support with gurobi 951 for tracking with learning.</li>
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<li>This beta version is currently distributed without tensorflow</li>
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<li>Experimental native build for Apple Silicon (M1, M2, M3) is available, which means better performance on these machines overall.
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Notes for the silicon version:
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<ul>
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<li>Currently only 2D networks are supported in the Neural Network and Trainable Domain Adaptation Workflows.
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These, however, run accelerated leveraging Metal Performance Shaders (mps).</li>
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</ul>
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</li>
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</ul>
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Note that on OSX there is no 3D preview in Carving, all other functionality should work as expected.
139+
We recommend OSX users to download the current <a href="{{site.baseurl}}/download.html#beta">beta version</a>.
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If you have an Apple Silicon (M1/M2/M3), then please select the "Apple Silicon (arm64)" build.
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<h5>Regular builds</h5>
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<table class="table">
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<tbody>
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<tr>
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<th><i class="fa fa-windows fa-lg"></i>&nbsp;Windows (64-bit)</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.1b23-win64.exe">version 1.4.1b23 (528 MB)</a></td>
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<td><b>Supported Versions:</b> Windows 10 and up</td>
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<td><a href="https://files.ilastik.org/ilastik-1.4.0.post1-win64.exe">version 1.4.0.post1 (547 MB)</a></td>
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<td><b>Supported Versions:</b> Windows 10</td>
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</tr>
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<th><i class="fa fa-linux fa-lg"></i>&nbsp;Linux (64-bit)</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.1b23-Linux.tar.bz2">version 1.4.1b23 (804 MB)</a></td>
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<td><a href="https://files.ilastik.org/ilastik-1.4.0.post1-Linux.tar.bz2">version 1.4.0.post1 (857 MB)</a></td>
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<td><b>Supported Versions:</b> Ubuntu 14 and up </td>
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</tr>
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<tr>
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<th><i class="fa fa-apple fa-lg"></i>&nbsp;Apple intel (64-bit), OSX</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.1b23-OSX.tar.bz2">version 1.4.1b23 (620 MB)</a></td>
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<th><i class="fa fa-apple fa-lg"></i>&nbsp;Mac (64-bit), OSX</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.0.post1-OSX.tar.bz2">version 1.4.0.post1 (739 MB)</a></td>
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<td><b>Supported Versions:</b> 10.9 and up</td>
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</tr>
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<th><i class="fa fa-apple fa-lg"></i>&nbsp;Apple Silicon (arm64), OSX</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.1b23-arm64-OSX.tar.bz2">version 1.4.1b23 (432 MB)</a></td>
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<td><b>Supported Versions:</b> 11 and up</td>
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</tr>
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</table>
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<tr>
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<th><i class="fa fa-windows fa-lg"></i>&nbsp;Windows (64-bit)</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.1b23-gpu-win64.exe">version 1.4.1b23-gpu (1.9 GB)</a></td>
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<td><a href="https://files.ilastik.org/ilastik-1.4.0.post1-gpu-win64.exe">version 1.4.0.post1-gpu (1.8 GB)</a></td>
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</td>
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<td><b>Supported Versions:</b> Windows 10 and up, comes with cudatoolkit 11.8</td>
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<td><b>Supported Versions:</b> Windows 10, comes with cudatoolkit 11.3</td>
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</tr>
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<th><i class="fa fa-linux fa-lg"></i>&nbsp;Linux (64-bit)</th>
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<td><a href="https://files.ilastik.org/ilastik-1.4.1b23-gpu-Linux.tar.bz2">version 1.4.1b23-gpu (3.4 GB)</a></td>
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<td><b>Supported Versions:</b> Ubuntu 14 and up, comes with cudatoolkit 11.8</td>
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<td><a href="https://files.ilastik.org/ilastik-1.4.0.post1-gpu-Linux.tar.bz2">version 1.4.0.post1-gpu (2.9 GB)</a></td>
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<td><b>Supported Versions:</b> Ubuntu 14 and up, comes with cudatoolkit 11.3</td>
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</tr>
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</tbody>
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</table>
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<br>
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<h3 id="previous">Previous stable versions</h3>
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<div class="panel panel-danger">
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<div class="panel-heading">
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<h3 class="panel-title">macOS Big Sur and Monterey users please download ilastik 1.4.</a></h3>
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</div>
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<div class="panel-body">
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Dear macOS users, you are running macOS 11 (Big Sur), or newer <em>please download
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the latest ilastik version (1.4.0 or newer).</em>
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Older versions don't run anymore on OSX.
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</div>
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</div>
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<h4 id="133">Version 1.3.3</h4>
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Includes various improvements and bug fixes.

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